Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0522
         (664 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35177| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_58465| Best HMM Match : zf-B_box (HMM E-Value=0.00022)              28   5.9  
SB_37007| Best HMM Match : Oleosin (HMM E-Value=0.43)                  28   7.8  

>SB_35177| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1293

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = -3

Query: 452 SATENEIYVPPN*SRESR*LSKTTTKTNTASRILCKPSSSKIVSRT*KLLTENVS 288
           S++E+E+YVP N  + +  + K  TKT    +       S IVS   ++ T  V+
Sbjct: 722 SSSEHEVYVPNNPHKNNNRIKKNQTKTVNGLKEHVNGKLSPIVSPKDEISTGEVT 776


>SB_58465| Best HMM Match : zf-B_box (HMM E-Value=0.00022)
          Length = 476

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
 Frame = -3

Query: 305 LTENVSCLARGMHRECRRAVS-VR--CCQVTAGPGGCSHEELANNDANDGHAYC 153
           + + +  L  G + +C R +  +R  CC V   P   +  +    + N GH YC
Sbjct: 114 ICQTLEVLLLGFYPDCSRIMDDLRGMCCSVCYNPFHATESQAIPRNLNCGHTYC 167


>SB_37007| Best HMM Match : Oleosin (HMM E-Value=0.43)
          Length = 298

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -2

Query: 516 KNRNR*CYDYPDIAKTNLNKIVGNRERNLRP 424
           +NRNR C+ YPD    N      NR R+  P
Sbjct: 163 RNRNRDCHCYPDSRHGNDRNHGRNRNRDCHP 193


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,843,003
Number of Sequences: 59808
Number of extensions: 312237
Number of successful extensions: 724
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 719
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)