BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0522 (664 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At2g31215.1 68415.m03812 basic helix-loop-helix (bHLH) family pr... 31 0.90 At2g32680.1 68415.m03995 disease resistance family protein conta... 28 4.8 At4g17360.1 68417.m02603 formyltetrahydrofolate deformylase, put... 28 6.4 >At2g31215.1 68415.m03812 basic helix-loop-helix (bHLH) family protein contains Pfam profile: PF00010 helix-loop-helix DNA-binding domain Length = 129 Score = 30.7 bits (66), Expect = 0.90 Identities = 10/22 (45%), Positives = 16/22 (72%) Frame = -3 Query: 596 KFIAEWKFLIEKVNCGTHHSNI 531 + ++E K+L+EK CG H+NI Sbjct: 70 RLVSELKYLVEKKKCGARHNNI 91 >At2g32680.1 68415.m03995 disease resistance family protein contains leucine rich-repeat (LRR) domains Pfam:PF00560, INTERPRO:IPR001611; similar to Cf-2.2 [Lycopersicon pimpinellifolium] gi|1184077|gb|AAC15780 Length = 890 Score = 28.3 bits (60), Expect = 4.8 Identities = 15/36 (41%), Positives = 19/36 (52%) Frame = +1 Query: 487 IIVTSPITILYSDY*MFEWWVPQFTFSIKNFHSAIN 594 I+V S + +LY D FE +P SIK F A N Sbjct: 458 ILVNSSVLLLYLDSNNFEGALPDLPLSIKGFGVASN 493 >At4g17360.1 68417.m02603 formyltetrahydrofolate deformylase, putative similar to formyltetrahydrofolate deformylase [strain PCC 6803- Synechocystis sp.] SWISS-PROT:Q55135 Length = 328 Score = 27.9 bits (59), Expect = 6.4 Identities = 11/16 (68%), Positives = 13/16 (81%) Frame = -2 Query: 54 SAVTPLLIAGFHVLTC 7 S+V+PLLI GFHV C Sbjct: 36 SSVSPLLIPGFHVFHC 51 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,156,216 Number of Sequences: 28952 Number of extensions: 212249 Number of successful extensions: 462 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 458 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 462 length of database: 12,070,560 effective HSP length: 78 effective length of database: 9,812,304 effective search space used: 1393347168 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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