Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0522
         (664 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g31215.1 68415.m03812 basic helix-loop-helix (bHLH) family pr...    31   0.90 
At2g32680.1 68415.m03995 disease resistance family protein conta...    28   4.8  
At4g17360.1 68417.m02603 formyltetrahydrofolate deformylase, put...    28   6.4  

>At2g31215.1 68415.m03812 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 129

 Score = 30.7 bits (66), Expect = 0.90
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -3

Query: 596 KFIAEWKFLIEKVNCGTHHSNI 531
           + ++E K+L+EK  CG  H+NI
Sbjct: 70  RLVSELKYLVEKKKCGARHNNI 91


>At2g32680.1 68415.m03995 disease resistance family protein contains
           leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; similar to Cf-2.2 [Lycopersicon
           pimpinellifolium] gi|1184077|gb|AAC15780
          Length = 890

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +1

Query: 487 IIVTSPITILYSDY*MFEWWVPQFTFSIKNFHSAIN 594
           I+V S + +LY D   FE  +P    SIK F  A N
Sbjct: 458 ILVNSSVLLLYLDSNNFEGALPDLPLSIKGFGVASN 493


>At4g17360.1 68417.m02603 formyltetrahydrofolate deformylase,
          putative similar to formyltetrahydrofolate deformylase
          [strain PCC 6803- Synechocystis sp.] SWISS-PROT:Q55135
          Length = 328

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = -2

Query: 54 SAVTPLLIAGFHVLTC 7
          S+V+PLLI GFHV  C
Sbjct: 36 SSVSPLLIPGFHVFHC 51


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,156,216
Number of Sequences: 28952
Number of extensions: 212249
Number of successful extensions: 462
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 462
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1393347168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)