Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0521
         (476 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g23290.1 68414.m02913 60S ribosomal protein L27A (RPL27aB) si...   108   2e-24
At1g70600.1 68414.m08133 60S ribosomal protein L27A (RPL27aC) id...   105   2e-23
At1g12960.1 68414.m01505 60S ribosomal protein L27A (RPL27aA) si...    49   2e-06
At2g16100.1 68415.m01846 hypothetical protein                          29   2.2  
At4g29090.1 68417.m04163 reverse transcriptase, putative / RNA-d...    28   3.8  
At3g17410.1 68416.m02224 serine/threonine protein kinase, putati...    27   6.6  

>At1g23290.1 68414.m02913 60S ribosomal protein L27A (RPL27aB)
           similar to 60S RIBOSOMAL PROTEIN L27A GB:P49637
           GI:1710530 from [Arabidopsis thaliana]
          Length = 146

 Score =  108 bits (259), Expect = 2e-24
 Identities = 49/82 (59%), Positives = 55/82 (67%)
 Frame = +1

Query: 10  MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 189
           MAT+ KK RK RGHVS                 NAGG HHHRI  DKYHPGYFGK+GMR 
Sbjct: 1   MATALKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 190 FHFRKNKNFCPVLNLDKLWTLV 255
           FH  +NK FCP++NLDKLW+LV
Sbjct: 61  FHKLRNKFFCPIVNLDKLWSLV 82


>At1g70600.1 68414.m08133 60S ribosomal protein L27A (RPL27aC)
           identical to 60S ribosomal protein L27A GB:P49637
           [Arabidopsis thaliana]
          Length = 146

 Score =  105 bits (252), Expect = 2e-23
 Identities = 48/82 (58%), Positives = 53/82 (64%)
 Frame = +1

Query: 10  MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 189
           M T  KK RK RGHVS                 NAGG HHHRI  DKYHPGYFGK+GMR 
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 190 FHFRKNKNFCPVLNLDKLWTLV 255
           FH  +NK FCP++NLDKLW+LV
Sbjct: 61  FHKLRNKFFCPIVNLDKLWSLV 82


>At1g12960.1 68414.m01505 60S ribosomal protein L27A (RPL27aA)
           similar to GB:BAA96068 from [Panax ginseng]
          Length = 104

 Score = 48.8 bits (111), Expect = 2e-06
 Identities = 33/87 (37%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
 Frame = +1

Query: 10  MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGK--LGM 183
           M TS+KKTR LR HVS                       H R    +  PG  G   +GM
Sbjct: 1   MTTSRKKTRNLREHVSVG---------------------HGRFGKHRKLPGSRGNAGVGM 39

Query: 184 RNFHFRKNKNFCPVLNLDKLWTLVLNR 264
           R FH  +NK +C ++NLDKLW++VL +
Sbjct: 40  RYFHKLRNKFYCQIVNLDKLWSMVLGK 66


>At2g16100.1 68415.m01846 hypothetical protein 
          Length = 250

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 123 APSQNQHGQVPSWILWQTW 179
           +P  +Q  Q+P WILW+ W
Sbjct: 20  SPRTSQFHQLPLWILWRIW 38


>At4g29090.1 68417.m04163 reverse transcriptase, putative /
           RNA-dependent DNA polymerase, putative similar to
           reverse transcriptase [Arabidopsis thaliana] GI:976278;
           contains Pfam profile PF00075: RNase H
          Length = 575

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = +3

Query: 126 PSQNQHGQVPSWILWQTWYEKFPL-*KEQEFLSSFELR*ALDISSEQTRLKYASAPDGKV 302
           P   +  Q+  W+LW+ W  +  L  + +EF +   LR A D   E+ R++  +   G  
Sbjct: 351 PQWEKASQLVPWLLWRLWKNRNELVFRGREFNAQEVLRRAED-DLEEWRIRTEAESCGTK 409

Query: 303 PVIN 314
           P +N
Sbjct: 410 PQVN 413


>At3g17410.1 68416.m02224 serine/threonine protein kinase, putative
           similar to Pto kinase interactor 1 GB:AAC61805 from
           [Lycopersicon esculentum]
          Length = 364

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = -2

Query: 406 ADFE-KNFAFTMTGCLGSLPLPSNL*YPALTILMTGTLPSGADAY-FSLVCSELMS 245
           ADF+  N A  M   L S  +     Y A    MTGTL + +D Y F +V  EL++
Sbjct: 216 ADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGTLSTKSDVYSFGVVLLELLT 271


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,779,083
Number of Sequences: 28952
Number of extensions: 192937
Number of successful extensions: 477
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 476
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 821630280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)