Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0519
         (688 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2C4.15c |ubx2|ucp13|UBX domain protein Ubx2|Schizosaccharomy...    30   0.36 
SPBC557.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    29   0.63 
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   4.4  
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr...    26   5.9  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    25   7.8  
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom...    25   7.8  

>SPAC2C4.15c |ubx2|ucp13|UBX domain protein Ubx2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 18/58 (31%), Positives = 27/58 (46%)
 Frame = +3

Query: 195 STPHRRTQSTAPRARTASQTSIRRRQPDDAECDRIERYPGTGAERTAVRTGGLPGGAR 368
           ST   + +S++ +A +         + D AECD  E  PG    R  +R   +P GAR
Sbjct: 311 STTESQGESSSQQAESHGVADDTVHKIDSAECDAEEPSPGPNVTRIQIR---MPNGAR 365


>SPBC557.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 203

 Score = 29.1 bits (62), Expect = 0.63
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = +2

Query: 575 IPADKKPPLYSNVNNDSEAPEDSDLLV 655
           I AD K PL+ +VNND E  ED   L+
Sbjct: 168 ILADLKIPLFLSVNNDEELSEDQKRLL 194


>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 262

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 14/57 (24%), Positives = 28/57 (49%)
 Frame = -1

Query: 481 LNEELLTPESLLFSEAQGSPPATNLTTFSRWSDSQVSSLAPPGNPPVRTAVRSAPVP 311
           LN+E + P  +  +     PP  + ++   +S +  S+     + P+ TA  +AP+P
Sbjct: 133 LNQEQVPPPPVRPNVMSQMPPPPSYSSSGSYSQTYQSNANYTASSPLPTASANAPLP 189


>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 11  FLLQSNCCISWKVEKLTVKLTVAVPVPK 94
           F +  +C   W++  L    +VAVP+PK
Sbjct: 366 FHIDCSCFDDWRLFSLKESSSVAVPIPK 393


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1919

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = +2

Query: 8   VFLLQSNCCISWKVEKLTVKLTVAVPVPKEETRRL 112
           V +  +NC   +K   LT +L + +P+P  +   L
Sbjct: 629 VIIFLNNCLKFYKAFSLTKRLEITMPIPASDYSHL 663


>SPBC16C6.06 |pep1|vps10|sorting receptor for
           CPY|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1466

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -2

Query: 456 NRCSSLKRRAHRRPQT 409
           N+C+  KR +HR PQT
Sbjct: 672 NKCTPNKRDSHREPQT 687


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,454,328
Number of Sequences: 5004
Number of extensions: 44161
Number of successful extensions: 160
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)