Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0519
(688 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0647 - 26928244-26928535,26931321-26931454,26932278-26933414 33 0.21
10_08_0789 + 20569738-20570207,20573425-20573464,20573484-205735... 30 2.0
04_04_0393 - 24894170-24894676,24895956-24896627,24897720-248979... 29 2.6
02_01_0243 - 1601977-1602834,1602857-1603063 29 3.5
11_01_0340 + 2534998-2535660 29 4.6
03_01_0169 + 1385813-1388359 29 4.6
08_02_1162 - 24811327-24812162,24815969-24816028,24816526-248167... 28 6.0
03_04_0107 - 17329552-17329671,17331290-17331364,17331560-17331631 28 8.0
02_05_1277 - 35408097-35409080 28 8.0
>04_04_0647 - 26928244-26928535,26931321-26931454,26932278-26933414
Length = 520
Score = 33.1 bits (72), Expect = 0.21
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -3
Query: 413 KLNDIQPVVRFAGVVSSPARQPTRAYSRSLSSCTGITF 300
+++ + P + A V SPA +P RA+ SL+ TG F
Sbjct: 214 EISSLSPSMLIADYVGSPAAEPMRAFPASLTGATGSAF 251
>10_08_0789 +
20569738-20570207,20573425-20573464,20573484-20573536,
20573633-20574212,20574323-20575384,20575631-20575813,
20576112-20576199,20576285-20576532,20576712-20577053,
20579026-20579163,20579521-20579547
Length = 1076
Score = 29.9 bits (64), Expect = 2.0
Identities = 26/79 (32%), Positives = 32/79 (40%), Gaps = 3/79 (3%)
Frame = +3
Query: 201 PHRRTQSTAPRARTASQTSIR--RRQPDDAECDRIERYPGTGAERTAVRTG-GLPGGARD 371
P RR + PR R+ + R R P A R R PG G E A+ G G G RD
Sbjct: 62 PSRRGTTRPPRTRSRRSSCSRAARTPPSGARSPR-RRRPGAG-ESVAIADGDGCEGDQRD 119
Query: 372 DTCESDHRLNVVKFVAGGE 428
D R + GG+
Sbjct: 120 DELALGDRRRRERGGGGGD 138
>04_04_0393 -
24894170-24894676,24895956-24896627,24897720-24897956,
24898852-24899388,24899612-24899662,24900756-24900767
Length = 671
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = -2
Query: 186 CSDADAAHAYSSFVATG--ITRELSSTKRRVSSFGTGTATVNFTVSFS 49
C DAD S+ +ATG SS+ ++ G+GT T++F+ S S
Sbjct: 114 CGDADHKAVSSTVLATGSETVSSSSSSDATATAAGSGTETISFSSSGS 161
>02_01_0243 - 1601977-1602834,1602857-1603063
Length = 354
Score = 29.1 bits (62), Expect = 3.5
Identities = 21/57 (36%), Positives = 28/57 (49%)
Frame = -1
Query: 367 LAPPGNPPVRTAVRSAPVPG*RSILSHSASSGCRRLIDVWLAVRARGAVDWVRLCGV 197
+APP PPV A P+ L+ +A +DVW+A A G +WVRL V
Sbjct: 223 VAPP--PPVSHA-DEGPMFDMHGALAVTAMKSTEPYMDVWIAA-AAGGENWVRLLRV 275
>11_01_0340 + 2534998-2535660
Length = 220
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -1
Query: 421 PATNLTTFSRWSDSQVSSLAPPGNPPVRTAVRSA 320
PA++ +T +RW ++V + APP N R R +
Sbjct: 123 PASSSSTNARWDMNKVKNTAPPSNSNKRPVSRGS 156
>03_01_0169 + 1385813-1388359
Length = 848
Score = 28.7 bits (61), Expect = 4.6
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = -1
Query: 421 PATNLTTFSRW-SDSQVSSLAPPGNPPVRTAVRSAPVPG*RSILSHSASSGCRRLIDVWL 245
P+T L F + + S+++ PG+ P RT V AP + S+G + ++
Sbjct: 15 PSTALAAFPYFLACGAASNVSFPGDSPARTFVPDAPFLSSAGRVPAVTSTGSNTIPPLYA 74
Query: 244 AVRARGA 224
A RA G+
Sbjct: 75 AARAAGS 81
>08_02_1162 -
24811327-24812162,24815969-24816028,24816526-24816725,
24817436-24817657,24817989-24818312,24818852-24818988
Length = 592
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = +1
Query: 196 VHRTDEPNQRPPEPAPQAKRQSDGDS 273
+ RTD P P PAP AK SD S
Sbjct: 517 IFRTDPPMAPSPAPAPDAKPASDAAS 542
>03_04_0107 - 17329552-17329671,17331290-17331364,17331560-17331631
Length = 88
Score = 27.9 bits (59), Expect = 8.0
Identities = 22/72 (30%), Positives = 30/72 (41%)
Frame = +3
Query: 207 RRTQSTAPRARTASQTSIRRRQPDDAECDRIERYPGTGAERTAVRTGGLPGGARDDTCES 386
R T+S RA+ I+ ++ C + E PG + T V+ G AR TC S
Sbjct: 9 RNTESNPIRAQHHG-VQIKGDFANNKTCSKHELDPGDEIDWTVVKWVGFFLSARASTCGS 67
Query: 387 DHRLNVVKFVAG 422
R N V G
Sbjct: 68 QLRNNTVCLAEG 79
>02_05_1277 - 35408097-35409080
Length = 327
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -1
Query: 385 DSQVSSLAPPGNPPVRTAVRSAPVP 311
DS+ S+ APP PP + V +AP P
Sbjct: 54 DSKPSTPAPPPPPPAQPPVLAAPAP 78
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,240,068
Number of Sequences: 37544
Number of extensions: 399378
Number of successful extensions: 1664
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1662
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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