Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0519
(688 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37581| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.50
SB_10615| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_58665| Best HMM Match : TSP_1 (HMM E-Value=7.5e-10) 30 1.5
SB_4178| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_25209| Best HMM Match : Astacin (HMM E-Value=7.69999e-41) 29 3.5
SB_31319| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_29302| Best HMM Match : LRR_1 (HMM E-Value=1.1e-11) 29 4.7
SB_47470| Best HMM Match : Pou (HMM E-Value=1.3e-22) 29 4.7
SB_258| Best HMM Match : TPR_1 (HMM E-Value=0.82) 28 6.2
SB_16182| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_57860| Best HMM Match : DUF1226 (HMM E-Value=1.5e-07) 28 8.1
>SB_37581| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 101
Score = 31.9 bits (69), Expect = 0.50
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = +3
Query: 204 HRRTQSTAPRARTASQTSIRRRQPDDAECDRIERYPGTGAERTAVRTGGLP 356
H + T P T S T +R ++ R P T ++TA++TG P
Sbjct: 23 HTTERKTTPSTSTRSPTKSTKRPSSTLRRQKLLRPPQTTQQKTAIKTGNKP 73
>SB_10615| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1884
Score = 30.7 bits (66), Expect = 1.2
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 214 PNQRPPEPAPQAKRQSDGDSLMTPN 288
PN++PP P P R +G ++ TPN
Sbjct: 1706 PNEKPPLPPPAYPRTPNGSAVTTPN 1730
>SB_58665| Best HMM Match : TSP_1 (HMM E-Value=7.5e-10)
Length = 718
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +2
Query: 32 CISWKVEKLTVKLTVAVPVPKEETRRLVDDSSLVIPVATK 151
C+S +V+ TVK T VP+ E R+LV + + P+ TK
Sbjct: 106 CLS-RVDHCTVKNTSHVPISPEWKRKLVPEGMMSTPLFTK 144
>SB_4178| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 107
Score = 29.9 bits (64), Expect = 2.0
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = -2
Query: 567 GATCARTRASAYKSADAAGRLMDDEDEPNSTKNYSLPNRCSS--LKRRAHRRPQ 412
G++ + + + KS A R +E N T Y LPNRC S L R+A + P+
Sbjct: 4 GSSTQKKKRTKKKSPLAWDRTRSEEQNGNHT--YGLPNRCGSTRLLRKAVKNPK 55
>SB_25209| Best HMM Match : Astacin (HMM E-Value=7.69999e-41)
Length = 533
Score = 29.1 bits (62), Expect = 3.5
Identities = 19/40 (47%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = -2
Query: 486 PNSTKNYSLPNRCSSLKRRAHRRP--QT*RHSAGGQIRRC 373
P T+ LP +S RR RR QT R SAG +IRRC
Sbjct: 52 PFFTEFNRLPTNRTSKYRRIRRRGSRQTWRFSAGDRIRRC 91
>SB_31319| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1186
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = -2
Query: 492 DEPNSTKNYSLPNRCSSLKRRAHRRP 415
DEPN +Y+LP R S +RRA R P
Sbjct: 315 DEPNIMYSYNLPPREPSGRRRAPRPP 340
>SB_29302| Best HMM Match : LRR_1 (HMM E-Value=1.1e-11)
Length = 606
Score = 28.7 bits (61), Expect = 4.7
Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 4/74 (5%)
Frame = +1
Query: 106 PFGRRQFPRDSGCYEXXXXXXXXXXXTSPLVHR----TDEPNQRPPEPAPQAKRQSDGDS 273
P +P D YE +SP+ + +++P PEPAP+ K S ++
Sbjct: 530 PNPEEDWPEDMAAYEDAMREESGNDDSSPVTTQPGLSSEKPEASEPEPAPEPK--SPAEN 587
Query: 274 LMTPNATE*NVIPV 315
N T IP+
Sbjct: 588 STASNDTSTTAIPL 601
>SB_47470| Best HMM Match : Pou (HMM E-Value=1.3e-22)
Length = 441
Score = 28.7 bits (61), Expect = 4.7
Identities = 18/33 (54%), Positives = 20/33 (60%)
Frame = -1
Query: 427 SPPATNLTTFSRWSDSQVSSLAPPGNPPVRTAV 329
SPPA N+T D+ V S APPG PPV AV
Sbjct: 356 SPPA-NVTYAQVTEDTVVQSSAPPG-PPVSYAV 386
>SB_258| Best HMM Match : TPR_1 (HMM E-Value=0.82)
Length = 365
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = -1
Query: 466 LTPESLLFSEAQGSPPATNLTTFSRWSDSQVSSLAPPGNPPVRTA 332
L+ S F T+L +RW+ +Q + APPG RT+
Sbjct: 46 LSAASSDFGHMSAQTVFTSLDYLNRWAKAQAQTRAPPGARTTRTS 90
>SB_16182| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 162
Score = 28.3 bits (60), Expect = 6.2
Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Frame = -2
Query: 546 RASAYKSADAAGRLMDDEDEPNSTKNYSLPNRCSS--LKRRAHRRPQ 412
R SA A +D PN Y LPNR S L R+A + P+
Sbjct: 64 RCKTTASAKLACLQVDSRGSPNRNHTYGLPNRYGSTRLLRKAVKNPK 110
>SB_57860| Best HMM Match : DUF1226 (HMM E-Value=1.5e-07)
Length = 754
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +3
Query: 192 TSTPHRRTQSTAPRARTASQTSIRRRQPDDAECDRIERYPG 314
+ T H+R + T P +R S TS + PD++ R G
Sbjct: 352 SKTIHKRPRMTQPDSRNVSSTSRDKSSPDESSARGFTRPDG 392
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,119,893
Number of Sequences: 59808
Number of extensions: 406453
Number of successful extensions: 1345
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1330
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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