BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0519 (688 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z79605-7|CAB01908.1| 1440|Caenorhabditis elegans Hypothetical pr... 30 1.8 Z79604-7|CAB01901.1| 1440|Caenorhabditis elegans Hypothetical pr... 30 1.8 Z29967-1|CAA82854.1| 1440|Caenorhabditis elegans lin-15B protein. 30 1.8 U41624-7|AAF99946.3| 302|Caenorhabditis elegans Hypothetical pr... 30 1.8 U10413-1|AAA20089.1| 1440|Caenorhabditis elegans lin-15B protein... 30 1.8 U10412-1|AAA20088.1| 1440|Caenorhabditis elegans lin-15B protein... 30 1.8 U50193-3|AAP68918.1| 1189|Caenorhabditis elegans Nuclear pore co... 29 3.1 AF002196-2|AAP68956.1| 915|Caenorhabditis elegans Hypothetical ... 29 4.1 Z50028-1|CAL36517.1| 471|Caenorhabditis elegans Hypothetical pr... 28 5.4 Z49207-3|CAA89071.1| 927|Caenorhabditis elegans Hypothetical pr... 28 5.4 U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein. 28 5.4 DQ360812-1|ABC88649.1| 474|Caenorhabditis elegans intraflagella... 28 5.4 AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated... 28 5.4 AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated... 28 5.4 AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated... 28 5.4 AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated... 28 5.4 AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated... 28 5.4 AC006627-3|AAK85461.1| 504|Caenorhabditis elegans Hypothetical ... 28 5.4 U46669-3|AAA85744.2| 737|Caenorhabditis elegans Regulator of g ... 27 9.5 AF025454-8|AAK68370.1| 334|Caenorhabditis elegans Serpentine re... 27 9.5 >Z79605-7|CAB01908.1| 1440|Caenorhabditis elegans Hypothetical protein ZK662.4 protein. Length = 1440 Score = 29.9 bits (64), Expect = 1.8 Identities = 13/38 (34%), Positives = 19/38 (50%) Frame = -1 Query: 424 PPATNLTTFSRWSDSQVSSLAPPGNPPVRTAVRSAPVP 311 PP NL + S + S + + P PP RT + P+P Sbjct: 624 PPVANLQSTSSPATSSPTIIRPRAAPPPRTLAQGRPIP 661 >Z79604-7|CAB01901.1| 1440|Caenorhabditis elegans Hypothetical protein ZK662.4 protein. Length = 1440 Score = 29.9 bits (64), Expect = 1.8 Identities = 13/38 (34%), Positives = 19/38 (50%) Frame = -1 Query: 424 PPATNLTTFSRWSDSQVSSLAPPGNPPVRTAVRSAPVP 311 PP NL + S + S + + P PP RT + P+P Sbjct: 624 PPVANLQSTSSPATSSPTIIRPRAAPPPRTLAQGRPIP 661 >Z29967-1|CAA82854.1| 1440|Caenorhabditis elegans lin-15B protein. Length = 1440 Score = 29.9 bits (64), Expect = 1.8 Identities = 13/38 (34%), Positives = 19/38 (50%) Frame = -1 Query: 424 PPATNLTTFSRWSDSQVSSLAPPGNPPVRTAVRSAPVP 311 PP NL + S + S + + P PP RT + P+P Sbjct: 624 PPVANLQSTSSPATSSPTIIRPRAAPPPRTLAQGRPIP 661 >U41624-7|AAF99946.3| 302|Caenorhabditis elegans Hypothetical protein F46C8.8 protein. Length = 302 Score = 29.9 bits (64), Expect = 1.8 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 2/58 (3%) Frame = +1 Query: 226 PPEPAPQAKRQSDGDSLMTPNATE*NVIPVQELSERLYARVGCLA--GLETTPANLTT 393 PP P P+ ++ G L A N +P Q+ S + A L+ GL TPA TT Sbjct: 144 PPTPRPRPRQNLFGQFLGGGQAANSNALPSQQSSSQSAAGGNLLSLFGLMPTPAPTTT 201 >U10413-1|AAA20089.1| 1440|Caenorhabditis elegans lin-15B protein protein. Length = 1440 Score = 29.9 bits (64), Expect = 1.8 Identities = 13/38 (34%), Positives = 19/38 (50%) Frame = -1 Query: 424 PPATNLTTFSRWSDSQVSSLAPPGNPPVRTAVRSAPVP 311 PP NL + S + S + + P PP RT + P+P Sbjct: 624 PPVANLQSTSSPATSSPTIIRPRAAPPPRTLAQGRPIP 661 >U10412-1|AAA20088.1| 1440|Caenorhabditis elegans lin-15B protein protein. Length = 1440 Score = 29.9 bits (64), Expect = 1.8 Identities = 13/38 (34%), Positives = 19/38 (50%) Frame = -1 Query: 424 PPATNLTTFSRWSDSQVSSLAPPGNPPVRTAVRSAPVP 311 PP NL + S + S + + P PP RT + P+P Sbjct: 624 PPVANLQSTSSPATSSPTIIRPRAAPPPRTLAQGRPIP 661 >U50193-3|AAP68918.1| 1189|Caenorhabditis elegans Nuclear pore complex protein protein10, isoform b protein. Length = 1189 Score = 29.1 bits (62), Expect = 3.1 Identities = 16/36 (44%), Positives = 17/36 (47%) Frame = +3 Query: 321 AERTAVRTGGLPGGARDDTCESDHRLNVVKFVAGGE 428 A R A G LPG CES H + VV A GE Sbjct: 890 AGRAASNRGDLPGELIKLACESQHSVEVVLDCAAGE 925 >AF002196-2|AAP68956.1| 915|Caenorhabditis elegans Hypothetical protein C09D4.4b protein. Length = 915 Score = 28.7 bits (61), Expect = 4.1 Identities = 17/70 (24%), Positives = 34/70 (48%) Frame = -2 Query: 492 DEPNSTKNYSLPNRCSSLKRRAHRRPQT*RHSAGGQIRRCRL*PRQATHPCVQPFAQLLY 313 D N+ + ++PN S +AH + ++ R + R+ + PR+ + C Q ++ L Sbjct: 375 DLNNANRQVTIPNSASMPVVKAHEKHKSFREKLRNETRKL-IHPRRKSLDCSQSLSRKLL 433 Query: 312 RDNVLFCRIR 283 +D + R R Sbjct: 434 KDGGVTSRSR 443 >Z50028-1|CAL36517.1| 471|Caenorhabditis elegans Hypothetical protein F46F6.4a protein. Length = 471 Score = 28.3 bits (60), Expect = 5.4 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 2/51 (3%) Frame = -1 Query: 463 TPESLLFSEAQGSPPATNLTTFSRWSDSQVSSLAPP--GNPPVRTAVRSAP 317 +PESL + +A +P A N ++D + PP G+PP T+ P Sbjct: 138 SPESLRYIQALENPMAANGEFEEEFNDLADPQVQPPPMGSPPAYTSADEGP 188 >Z49207-3|CAA89071.1| 927|Caenorhabditis elegans Hypothetical protein R07E3.6 protein. Length = 927 Score = 28.3 bits (60), Expect = 5.4 Identities = 14/39 (35%), Positives = 20/39 (51%) Frame = +3 Query: 186 ITTSTPHRRTQSTAPRARTASQTSIRRRQPDDAECDRIE 302 +TT T +TAP A+ T+ +R +AE D IE Sbjct: 468 VTTDATEATTTTTAPTTTVATTTTKKRSNIPEAEEDEIE 506 >U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein. Length = 6632 Score = 28.3 bits (60), Expect = 5.4 Identities = 17/32 (53%), Positives = 19/32 (59%), Gaps = 3/32 (9%) Frame = -1 Query: 400 FSRWSDSQVSSLAP---PGNPPVRTAVRSAPV 314 FS WS S+ SSL P G PP R V+S PV Sbjct: 486 FSEWSGSRKSSLFPGPEEGGPP-RKKVKSPPV 516 >DQ360812-1|ABC88649.1| 474|Caenorhabditis elegans intraflagellar transport proteinvariant a protein. Length = 474 Score = 28.3 bits (60), Expect = 5.4 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 2/51 (3%) Frame = -1 Query: 463 TPESLLFSEAQGSPPATNLTTFSRWSDSQVSSLAPP--GNPPVRTAVRSAP 317 +PESL + +A +P A N ++D + PP G+PP T+ P Sbjct: 141 SPESLRYIQALENPMAANGEFEEEFNDLADPQVQPPPMGSPPAYTSADEGP 191 >AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated protein 89, isoform e protein. Length = 5992 Score = 28.3 bits (60), Expect = 5.4 Identities = 17/32 (53%), Positives = 19/32 (59%), Gaps = 3/32 (9%) Frame = -1 Query: 400 FSRWSDSQVSSLAP---PGNPPVRTAVRSAPV 314 FS WS S+ SSL P G PP R V+S PV Sbjct: 486 FSEWSGSRKSSLFPGPEEGGPP-RKKVKSPPV 516 >AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated protein 89, isoform a protein. Length = 6632 Score = 28.3 bits (60), Expect = 5.4 Identities = 17/32 (53%), Positives = 19/32 (59%), Gaps = 3/32 (9%) Frame = -1 Query: 400 FSRWSDSQVSSLAP---PGNPPVRTAVRSAPV 314 FS WS S+ SSL P G PP R V+S PV Sbjct: 486 FSEWSGSRKSSLFPGPEEGGPP-RKKVKSPPV 516 >AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated protein 89, isoform g protein. Length = 7122 Score = 28.3 bits (60), Expect = 5.4 Identities = 17/32 (53%), Positives = 19/32 (59%), Gaps = 3/32 (9%) Frame = -1 Query: 400 FSRWSDSQVSSLAP---PGNPPVRTAVRSAPV 314 FS WS S+ SSL P G PP R V+S PV Sbjct: 486 FSEWSGSRKSSLFPGPEEGGPP-RKKVKSPPV 516 >AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated protein 89, isoform f protein. Length = 7441 Score = 28.3 bits (60), Expect = 5.4 Identities = 17/32 (53%), Positives = 19/32 (59%), Gaps = 3/32 (9%) Frame = -1 Query: 400 FSRWSDSQVSSLAP---PGNPPVRTAVRSAPV 314 FS WS S+ SSL P G PP R V+S PV Sbjct: 486 FSEWSGSRKSSLFPGPEEGGPP-RKKVKSPPV 516 >AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated protein 89, isoform b protein. Length = 8081 Score = 28.3 bits (60), Expect = 5.4 Identities = 17/32 (53%), Positives = 19/32 (59%), Gaps = 3/32 (9%) Frame = -1 Query: 400 FSRWSDSQVSSLAP---PGNPPVRTAVRSAPV 314 FS WS S+ SSL P G PP R V+S PV Sbjct: 486 FSEWSGSRKSSLFPGPEEGGPP-RKKVKSPPV 516 >AC006627-3|AAK85461.1| 504|Caenorhabditis elegans Hypothetical protein E01A2.4 protein. Length = 504 Score = 28.3 bits (60), Expect = 5.4 Identities = 14/40 (35%), Positives = 20/40 (50%) Frame = +3 Query: 192 TSTPHRRTQSTAPRARTASQTSIRRRQPDDAECDRIERYP 311 +++P RR + +PR R+ S RR P RI R P Sbjct: 88 SASPPRRRRDDSPRKRSRSPPRRTRRSPSPPRRRRISRSP 127 >U46669-3|AAA85744.2| 737|Caenorhabditis elegans Regulator of g protein signalingprotein 6 protein. Length = 737 Score = 27.5 bits (58), Expect = 9.5 Identities = 20/46 (43%), Positives = 26/46 (56%) Frame = -1 Query: 427 SPPATNLTTFSRWSDSQVSSLAPPGNPPVRTAVRSAPVPG*RSILS 290 SP +T +TT S + S SS+A PPV A+RSA P S L+ Sbjct: 676 SPTSTTITT-SGTTTSATSSVAT-APPPVLHAMRSASTPATSSQLT 719 >AF025454-8|AAK68370.1| 334|Caenorhabditis elegans Serpentine receptor, class i protein62 protein. Length = 334 Score = 27.5 bits (58), Expect = 9.5 Identities = 11/32 (34%), Positives = 23/32 (71%), Gaps = 2/32 (6%) Frame = -2 Query: 354 ATHPCV-QPFAQLLYR-DNVLFCRIRRHQAVA 265 +TH C+ A ++Y+ ++++FC +R+HQ +A Sbjct: 89 STHFCLTMVIATIIYQIESMVFCFVRKHQTIA 120 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,299,172 Number of Sequences: 27780 Number of extensions: 288826 Number of successful extensions: 1246 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 1163 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1244 length of database: 12,740,198 effective HSP length: 79 effective length of database: 10,545,578 effective search space used: 1571291122 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -