Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0519
         (688 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79605-7|CAB01908.1| 1440|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z79604-7|CAB01901.1| 1440|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z29967-1|CAA82854.1| 1440|Caenorhabditis elegans lin-15B protein.      30   1.8  
U41624-7|AAF99946.3|  302|Caenorhabditis elegans Hypothetical pr...    30   1.8  
U10413-1|AAA20089.1| 1440|Caenorhabditis elegans lin-15B protein...    30   1.8  
U10412-1|AAA20088.1| 1440|Caenorhabditis elegans lin-15B protein...    30   1.8  
U50193-3|AAP68918.1| 1189|Caenorhabditis elegans Nuclear pore co...    29   3.1  
AF002196-2|AAP68956.1|  915|Caenorhabditis elegans Hypothetical ...    29   4.1  
Z50028-1|CAL36517.1|  471|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z49207-3|CAA89071.1|  927|Caenorhabditis elegans Hypothetical pr...    28   5.4  
U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.       28   5.4  
DQ360812-1|ABC88649.1|  474|Caenorhabditis elegans intraflagella...    28   5.4  
AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated...    28   5.4  
AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated...    28   5.4  
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated...    28   5.4  
AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated...    28   5.4  
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated...    28   5.4  
AC006627-3|AAK85461.1|  504|Caenorhabditis elegans Hypothetical ...    28   5.4  
U46669-3|AAA85744.2|  737|Caenorhabditis elegans Regulator of g ...    27   9.5  
AF025454-8|AAK68370.1|  334|Caenorhabditis elegans Serpentine re...    27   9.5  

>Z79605-7|CAB01908.1| 1440|Caenorhabditis elegans Hypothetical
           protein ZK662.4 protein.
          Length = 1440

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -1

Query: 424 PPATNLTTFSRWSDSQVSSLAPPGNPPVRTAVRSAPVP 311
           PP  NL + S  + S  + + P   PP RT  +  P+P
Sbjct: 624 PPVANLQSTSSPATSSPTIIRPRAAPPPRTLAQGRPIP 661


>Z79604-7|CAB01901.1| 1440|Caenorhabditis elegans Hypothetical
           protein ZK662.4 protein.
          Length = 1440

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -1

Query: 424 PPATNLTTFSRWSDSQVSSLAPPGNPPVRTAVRSAPVP 311
           PP  NL + S  + S  + + P   PP RT  +  P+P
Sbjct: 624 PPVANLQSTSSPATSSPTIIRPRAAPPPRTLAQGRPIP 661


>Z29967-1|CAA82854.1| 1440|Caenorhabditis elegans lin-15B protein.
          Length = 1440

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -1

Query: 424 PPATNLTTFSRWSDSQVSSLAPPGNPPVRTAVRSAPVP 311
           PP  NL + S  + S  + + P   PP RT  +  P+P
Sbjct: 624 PPVANLQSTSSPATSSPTIIRPRAAPPPRTLAQGRPIP 661


>U41624-7|AAF99946.3|  302|Caenorhabditis elegans Hypothetical
           protein F46C8.8 protein.
          Length = 302

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
 Frame = +1

Query: 226 PPEPAPQAKRQSDGDSLMTPNATE*NVIPVQELSERLYARVGCLA--GLETTPANLTT 393
           PP P P+ ++   G  L    A   N +P Q+ S +  A    L+  GL  TPA  TT
Sbjct: 144 PPTPRPRPRQNLFGQFLGGGQAANSNALPSQQSSSQSAAGGNLLSLFGLMPTPAPTTT 201


>U10413-1|AAA20089.1| 1440|Caenorhabditis elegans lin-15B protein
           protein.
          Length = 1440

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -1

Query: 424 PPATNLTTFSRWSDSQVSSLAPPGNPPVRTAVRSAPVP 311
           PP  NL + S  + S  + + P   PP RT  +  P+P
Sbjct: 624 PPVANLQSTSSPATSSPTIIRPRAAPPPRTLAQGRPIP 661


>U10412-1|AAA20088.1| 1440|Caenorhabditis elegans lin-15B protein
           protein.
          Length = 1440

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -1

Query: 424 PPATNLTTFSRWSDSQVSSLAPPGNPPVRTAVRSAPVP 311
           PP  NL + S  + S  + + P   PP RT  +  P+P
Sbjct: 624 PPVANLQSTSSPATSSPTIIRPRAAPPPRTLAQGRPIP 661


>U50193-3|AAP68918.1| 1189|Caenorhabditis elegans Nuclear pore
           complex protein protein10, isoform b protein.
          Length = 1189

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 16/36 (44%), Positives = 17/36 (47%)
 Frame = +3

Query: 321 AERTAVRTGGLPGGARDDTCESDHRLNVVKFVAGGE 428
           A R A   G LPG      CES H + VV   A GE
Sbjct: 890 AGRAASNRGDLPGELIKLACESQHSVEVVLDCAAGE 925


>AF002196-2|AAP68956.1|  915|Caenorhabditis elegans Hypothetical
           protein C09D4.4b protein.
          Length = 915

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 17/70 (24%), Positives = 34/70 (48%)
 Frame = -2

Query: 492 DEPNSTKNYSLPNRCSSLKRRAHRRPQT*RHSAGGQIRRCRL*PRQATHPCVQPFAQLLY 313
           D  N+ +  ++PN  S    +AH + ++ R     + R+  + PR+ +  C Q  ++ L 
Sbjct: 375 DLNNANRQVTIPNSASMPVVKAHEKHKSFREKLRNETRKL-IHPRRKSLDCSQSLSRKLL 433

Query: 312 RDNVLFCRIR 283
           +D  +  R R
Sbjct: 434 KDGGVTSRSR 443


>Z50028-1|CAL36517.1|  471|Caenorhabditis elegans Hypothetical
           protein F46F6.4a protein.
          Length = 471

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = -1

Query: 463 TPESLLFSEAQGSPPATNLTTFSRWSDSQVSSLAPP--GNPPVRTAVRSAP 317
           +PESL + +A  +P A N      ++D     + PP  G+PP  T+    P
Sbjct: 138 SPESLRYIQALENPMAANGEFEEEFNDLADPQVQPPPMGSPPAYTSADEGP 188


>Z49207-3|CAA89071.1|  927|Caenorhabditis elegans Hypothetical
           protein R07E3.6 protein.
          Length = 927

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +3

Query: 186 ITTSTPHRRTQSTAPRARTASQTSIRRRQPDDAECDRIE 302
           +TT      T +TAP    A+ T+ +R    +AE D IE
Sbjct: 468 VTTDATEATTTTTAPTTTVATTTTKKRSNIPEAEEDEIE 506


>U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.
          Length = 6632

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 17/32 (53%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
 Frame = -1

Query: 400 FSRWSDSQVSSLAP---PGNPPVRTAVRSAPV 314
           FS WS S+ SSL P    G PP R  V+S PV
Sbjct: 486 FSEWSGSRKSSLFPGPEEGGPP-RKKVKSPPV 516


>DQ360812-1|ABC88649.1|  474|Caenorhabditis elegans intraflagellar
           transport proteinvariant a protein.
          Length = 474

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = -1

Query: 463 TPESLLFSEAQGSPPATNLTTFSRWSDSQVSSLAPP--GNPPVRTAVRSAP 317
           +PESL + +A  +P A N      ++D     + PP  G+PP  T+    P
Sbjct: 141 SPESLRYIQALENPMAANGEFEEEFNDLADPQVQPPPMGSPPAYTSADEGP 191


>AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated
           protein 89, isoform e protein.
          Length = 5992

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 17/32 (53%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
 Frame = -1

Query: 400 FSRWSDSQVSSLAP---PGNPPVRTAVRSAPV 314
           FS WS S+ SSL P    G PP R  V+S PV
Sbjct: 486 FSEWSGSRKSSLFPGPEEGGPP-RKKVKSPPV 516


>AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated
           protein 89, isoform a protein.
          Length = 6632

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 17/32 (53%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
 Frame = -1

Query: 400 FSRWSDSQVSSLAP---PGNPPVRTAVRSAPV 314
           FS WS S+ SSL P    G PP R  V+S PV
Sbjct: 486 FSEWSGSRKSSLFPGPEEGGPP-RKKVKSPPV 516


>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
           protein 89, isoform g protein.
          Length = 7122

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 17/32 (53%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
 Frame = -1

Query: 400 FSRWSDSQVSSLAP---PGNPPVRTAVRSAPV 314
           FS WS S+ SSL P    G PP R  V+S PV
Sbjct: 486 FSEWSGSRKSSLFPGPEEGGPP-RKKVKSPPV 516


>AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated
           protein 89, isoform f protein.
          Length = 7441

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 17/32 (53%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
 Frame = -1

Query: 400 FSRWSDSQVSSLAP---PGNPPVRTAVRSAPV 314
           FS WS S+ SSL P    G PP R  V+S PV
Sbjct: 486 FSEWSGSRKSSLFPGPEEGGPP-RKKVKSPPV 516


>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
           protein 89, isoform b protein.
          Length = 8081

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 17/32 (53%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
 Frame = -1

Query: 400 FSRWSDSQVSSLAP---PGNPPVRTAVRSAPV 314
           FS WS S+ SSL P    G PP R  V+S PV
Sbjct: 486 FSEWSGSRKSSLFPGPEEGGPP-RKKVKSPPV 516


>AC006627-3|AAK85461.1|  504|Caenorhabditis elegans Hypothetical
           protein E01A2.4 protein.
          Length = 504

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +3

Query: 192 TSTPHRRTQSTAPRARTASQTSIRRRQPDDAECDRIERYP 311
           +++P RR +  +PR R+ S     RR P      RI R P
Sbjct: 88  SASPPRRRRDDSPRKRSRSPPRRTRRSPSPPRRRRISRSP 127


>U46669-3|AAA85744.2|  737|Caenorhabditis elegans Regulator of g
           protein signalingprotein 6 protein.
          Length = 737

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 20/46 (43%), Positives = 26/46 (56%)
 Frame = -1

Query: 427 SPPATNLTTFSRWSDSQVSSLAPPGNPPVRTAVRSAPVPG*RSILS 290
           SP +T +TT S  + S  SS+A    PPV  A+RSA  P   S L+
Sbjct: 676 SPTSTTITT-SGTTTSATSSVAT-APPPVLHAMRSASTPATSSQLT 719


>AF025454-8|AAK68370.1|  334|Caenorhabditis elegans Serpentine
           receptor, class i protein62 protein.
          Length = 334

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 11/32 (34%), Positives = 23/32 (71%), Gaps = 2/32 (6%)
 Frame = -2

Query: 354 ATHPCV-QPFAQLLYR-DNVLFCRIRRHQAVA 265
           +TH C+    A ++Y+ ++++FC +R+HQ +A
Sbjct: 89  STHFCLTMVIATIIYQIESMVFCFVRKHQTIA 120


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,299,172
Number of Sequences: 27780
Number of extensions: 288826
Number of successful extensions: 1246
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1244
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)