Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0519
         (688 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g52950.1 68418.m06570 expressed protein ; expression supporte...    29   2.2  
At3g29800.1 68416.m03792 AAA-type ATPase family contains Pfam pr...    28   5.0  
At1g13030.1 68414.m01511 sphere organelles protein-related conta...    27   8.8  

>At5g52950.1 68418.m06570 expressed protein ; expression supported by
            MPSS
          Length = 945

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
 Frame = +3

Query: 207  RRTQSTAPRARTASQTSIRRRQPDDAECDRIERYPGTGAERTAVRTGGLPGGARDD-TCE 383
            ++T+++  +A    +T+ R+++    E DR+   P T  E   +RTG      +DD  CE
Sbjct: 874  KQTKNSKGKADQQQRTAKRKKEQRSVEYDRVCETPMTTIETKRIRTGN-----KDDYECE 928

Query: 384  SDHRLNVVK 410
            +  R +V K
Sbjct: 929  TLPRSSVPK 937


>At3g29800.1 68416.m03792 AAA-type ATPase family contains Pfam
           profile: ATPase family PF00004
          Length = 440

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +2

Query: 23  SNCCISWKVEKLTVKLTVAVPVPKEE-TRRLVDDSSLVI 136
           S+CC +W+ + L    +    V KE+  RRL+DD  L I
Sbjct: 147 SHCCDTWETKILDHHSSFETIVMKEDLKRRLIDDIDLFI 185


>At1g13030.1 68414.m01511 sphere organelles protein-related contains
           weak similarity to Swiss-Prot:Q09003 sphere organelles
           protein SPH-1 (Sphere protein 1) [Xenopus laevis]
          Length = 608

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = +1

Query: 229 PEPAPQAKRQ--SDGDSLMTPNATE*NVIPVQELSERLYARVGCLA 360
           PEP   AK+   S    L TP      V P +ELSE L A+   L+
Sbjct: 523 PEPDQSAKKPKLSANKELQTPAKENGEVSPWEELSEALSAKKAALS 568


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,517,216
Number of Sequences: 28952
Number of extensions: 266616
Number of successful extensions: 894
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 893
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)