BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0519 (688 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g52950.1 68418.m06570 expressed protein ; expression supporte... 29 2.2 At3g29800.1 68416.m03792 AAA-type ATPase family contains Pfam pr... 28 5.0 At1g13030.1 68414.m01511 sphere organelles protein-related conta... 27 8.8 >At5g52950.1 68418.m06570 expressed protein ; expression supported by MPSS Length = 945 Score = 29.5 bits (63), Expect = 2.2 Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 1/69 (1%) Frame = +3 Query: 207 RRTQSTAPRARTASQTSIRRRQPDDAECDRIERYPGTGAERTAVRTGGLPGGARDD-TCE 383 ++T+++ +A +T+ R+++ E DR+ P T E +RTG +DD CE Sbjct: 874 KQTKNSKGKADQQQRTAKRKKEQRSVEYDRVCETPMTTIETKRIRTGN-----KDDYECE 928 Query: 384 SDHRLNVVK 410 + R +V K Sbjct: 929 TLPRSSVPK 937 >At3g29800.1 68416.m03792 AAA-type ATPase family contains Pfam profile: ATPase family PF00004 Length = 440 Score = 28.3 bits (60), Expect = 5.0 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%) Frame = +2 Query: 23 SNCCISWKVEKLTVKLTVAVPVPKEE-TRRLVDDSSLVI 136 S+CC +W+ + L + V KE+ RRL+DD L I Sbjct: 147 SHCCDTWETKILDHHSSFETIVMKEDLKRRLIDDIDLFI 185 >At1g13030.1 68414.m01511 sphere organelles protein-related contains weak similarity to Swiss-Prot:Q09003 sphere organelles protein SPH-1 (Sphere protein 1) [Xenopus laevis] Length = 608 Score = 27.5 bits (58), Expect = 8.8 Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 2/46 (4%) Frame = +1 Query: 229 PEPAPQAKRQ--SDGDSLMTPNATE*NVIPVQELSERLYARVGCLA 360 PEP AK+ S L TP V P +ELSE L A+ L+ Sbjct: 523 PEPDQSAKKPKLSANKELQTPAKENGEVSPWEELSEALSAKKAALS 568 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,517,216 Number of Sequences: 28952 Number of extensions: 266616 Number of successful extensions: 894 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 847 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 893 length of database: 12,070,560 effective HSP length: 79 effective length of database: 9,783,352 effective search space used: 1457719448 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -