Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0518
         (651 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   153   1e-39
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   153   1e-39

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  153 bits (372), Expect = 1e-39
 Identities = 69/84 (82%), Positives = 78/84 (92%)
 Frame = +1

Query: 256 GGISAAVSKTAVATIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGN 435
           GG++AA+SKT VA IERVKLLLQVQH+SKQI+ +QRYKG++D FVRIPKEQG LS+WRGN
Sbjct: 17  GGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWRGN 76

Query: 436 FANVIRYFPTQALNFAFKDKYKQV 507
            ANVIRYFPTQALNFAFKDKYKQV
Sbjct: 77  LANVIRYFPTQALNFAFKDKYKQV 100



 Score = 35.1 bits (77), Expect = 6e-04
 Identities = 16/30 (53%), Positives = 16/30 (53%)
 Frame = +3

Query: 522 DKKTQFWRYFXXXXXXXXXXXXTSLCFVYP 611
           DK TQF RYF            TSLCFVYP
Sbjct: 106 DKNTQFLRYFVGNLASGGAAGATSLCFVYP 135



 Score = 32.3 bits (70), Expect = 0.004
 Identities = 14/14 (100%), Positives = 14/14 (100%)
 Frame = +2

Query: 608 PLDFARTRLAADVG 649
           PLDFARTRLAADVG
Sbjct: 135 PLDFARTRLAADVG 148



 Score = 31.9 bits (69), Expect = 0.006
 Identities = 14/15 (93%), Positives = 14/15 (93%)
 Frame = +2

Query: 209 MSNLADPVAFAKDFL 253
           MS LADPVAFAKDFL
Sbjct: 1   MSGLADPVAFAKDFL 15



 Score = 25.8 bits (54), Expect = 0.36
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +1

Query: 364 YKGIVDAFVRIPKEQGLLSFWRGNFANVIR 453
           YK  +  +  I K +G  +F++G F+N++R
Sbjct: 253 YKSTLHCWATIYKTEGGNAFFKGAFSNILR 282



 Score = 24.6 bits (51), Expect = 0.84
 Identities = 20/82 (24%), Positives = 34/82 (41%)
 Frame = +1

Query: 247 LPGGGISAAVSKTAVATIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFW 426
           L  GG + A S   V  ++  +  L    V K    ++ + G+ +   +I K  G+   +
Sbjct: 119 LASGGAAGATSLCFVYPLDFARTRLAAD-VGKA-GGEREFTGLGNCLTKIFKADGITGLY 176

Query: 427 RGNFANVIRYFPTQALNFAFKD 492
           RG   +V      +A  F F D
Sbjct: 177 RGFGVSVQGIIIYRAAYFGFYD 198


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  153 bits (372), Expect = 1e-39
 Identities = 69/84 (82%), Positives = 78/84 (92%)
 Frame = +1

Query: 256 GGISAAVSKTAVATIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGN 435
           GG++AA+SKT VA IERVKLLLQVQH+SKQI+ +QRYKG++D FVRIPKEQG LS+WRGN
Sbjct: 17  GGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWRGN 76

Query: 436 FANVIRYFPTQALNFAFKDKYKQV 507
            ANVIRYFPTQALNFAFKDKYKQV
Sbjct: 77  LANVIRYFPTQALNFAFKDKYKQV 100



 Score = 35.1 bits (77), Expect = 6e-04
 Identities = 16/30 (53%), Positives = 16/30 (53%)
 Frame = +3

Query: 522 DKKTQFWRYFXXXXXXXXXXXXTSLCFVYP 611
           DK TQF RYF            TSLCFVYP
Sbjct: 106 DKNTQFLRYFVGNLASGGAAGATSLCFVYP 135



 Score = 32.3 bits (70), Expect = 0.004
 Identities = 14/14 (100%), Positives = 14/14 (100%)
 Frame = +2

Query: 608 PLDFARTRLAADVG 649
           PLDFARTRLAADVG
Sbjct: 135 PLDFARTRLAADVG 148



 Score = 31.9 bits (69), Expect = 0.006
 Identities = 14/15 (93%), Positives = 14/15 (93%)
 Frame = +2

Query: 209 MSNLADPVAFAKDFL 253
           MS LADPVAFAKDFL
Sbjct: 1   MSGLADPVAFAKDFL 15



 Score = 25.8 bits (54), Expect = 0.36
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +1

Query: 364 YKGIVDAFVRIPKEQGLLSFWRGNFANVIR 453
           YK  +  +  I K +G  +F++G F+N++R
Sbjct: 253 YKSTLHCWATIYKTEGGNAFFKGAFSNILR 282



 Score = 24.6 bits (51), Expect = 0.84
 Identities = 20/82 (24%), Positives = 34/82 (41%)
 Frame = +1

Query: 247 LPGGGISAAVSKTAVATIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFW 426
           L  GG + A S   V  ++  +  L    V K    ++ + G+ +   +I K  G+   +
Sbjct: 119 LASGGAAGATSLCFVYPLDFARTRLAAD-VGKA-GGEREFTGLGNCLTKIFKADGITGLY 176

Query: 427 RGNFANVIRYFPTQALNFAFKD 492
           RG   +V      +A  F F D
Sbjct: 177 RGFGVSVQGIIIYRAAYFGFYD 198


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,649
Number of Sequences: 438
Number of extensions: 3333
Number of successful extensions: 15
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)