Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0517
         (617 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr...    27   2.9  
SPAC8F11.10c |pvg1|SPACUNK4.18|pyruvyltransferase |Schizosacchar...    25   6.6  

>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1225

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 14/62 (22%), Positives = 29/62 (46%)
 Frame = -1

Query: 599  TTYRSPVSRAKTSKQYRVFALCFPTRFLGRIFLNQYGFLSLD*HSIAVSSSGNNILLYID 420
            +T R   S  KTSK  ++  L  P+  +      + GF+  D  S  ++     + +++D
Sbjct: 880  STSRGSTS-VKTSKPKKISELLMPSEAVNAALDFESGFMGFDIISYKIAKPAQELAIFLD 938

Query: 419  EI 414
            ++
Sbjct: 939  DL 940


>SPAC8F11.10c |pvg1|SPACUNK4.18|pyruvyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 401

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = -1

Query: 470 HSIAVSSSG--NNILLYIDEIFFLLPTPKVRFSSRCT 366
           +  AV + G  N +LL  D +FF+ P P++R ++  T
Sbjct: 222 YGFAVDAFGKHNEVLLTPDIVFFMGPIPEIREATPIT 258


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,452,242
Number of Sequences: 5004
Number of extensions: 48968
Number of successful extensions: 113
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)