BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0517 (617 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z54216-3|CAA90944.2| 337|Caenorhabditis elegans Hypothetical pr... 28 4.6 Z73973-2|CAA98264.1| 277|Caenorhabditis elegans Hypothetical pr... 28 6.1 >Z54216-3|CAA90944.2| 337|Caenorhabditis elegans Hypothetical protein T24H10.4 protein. Length = 337 Score = 28.3 bits (60), Expect = 4.6 Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Frame = -1 Query: 593 YRSPVSRAKTSKQYRVFALCFPTRFLGRIFLNQYGFLSLD*HSIAVSSSGNNIL-LYIDE 417 + +P+++ ++ YR FALCF R L I +Q ++ H S +G ++L Y D+ Sbjct: 93 FTAPIAKIRSFSSYRPFALCF-HRILNEILHDQNDITTIYFH--VFSMNGCSLLAAYWDQ 149 Query: 416 I 414 + Sbjct: 150 L 150 >Z73973-2|CAA98264.1| 277|Caenorhabditis elegans Hypothetical protein F25D1.5 protein. Length = 277 Score = 27.9 bits (59), Expect = 6.1 Identities = 14/44 (31%), Positives = 27/44 (61%) Frame = +1 Query: 235 TIAENFSA*EQT*TLTRMALVRTQGEKVALSSLYSGMKSYTFFP 366 T NF A + T+ L++T+GE V +SS+ +G ++++ +P Sbjct: 115 TFKLNFQAVIEMTQKTKEHLIKTKGEIVNVSSIVAGPQAHSGYP 158 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,764,224 Number of Sequences: 27780 Number of extensions: 281582 Number of successful extensions: 621 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 595 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 621 length of database: 12,740,198 effective HSP length: 78 effective length of database: 10,573,358 effective search space used: 1342816466 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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