Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0517
         (617 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g11030.1 68416.m01331 expressed protein contains Pfam domain ...    31   0.46 
At1g68120.1 68414.m07781 expressed protein                             28   5.7  
At4g19185.1 68417.m02831 integral membrane family protein contai...    27   10.0 
At4g04330.1 68417.m00618 expressed protein                             27   10.0 
At3g52250.1 68416.m05742 myb family transcription factor contain...    27   10.0 

>At3g11030.1 68416.m01331 expressed protein contains Pfam domain
           PF03005: Arabidopsis proteins of unknown function
          Length = 451

 Score = 31.5 bits (68), Expect = 0.46
 Identities = 17/51 (33%), Positives = 28/51 (54%)
 Frame = -3

Query: 513 THIFKSIWLSFARLAFHCGFIFGQQYLTLYRRNIFSPTYAESSVFIPLYRE 361
           TH F ++ L+F  LA    FI+G  +++  RR++ SPT    S  + +  E
Sbjct: 17  THFFFTV-LAFILLA---AFIYGHDFISFSRRSLHSPTIVHQSAIVVVVDE 63


>At1g68120.1 68414.m07781 expressed protein
          Length = 270

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 1   EYRAGVQERTLAGGREGGAPRTQKKNKL 84
           E    V+ R  +GG+ GG P+ +K+ KL
Sbjct: 116 EVDESVKRRHCSGGQRGGVPKVKKEKKL 143


>At4g19185.1 68417.m02831 integral membrane family protein contains
           Pfam profile:PF00892 integral membrane protein DUF6
          Length = 398

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 19/49 (38%), Positives = 25/49 (51%)
 Frame = -3

Query: 540 ALFPDQIPRTHIFKSIWLSFARLAFHCGFIFGQQYLTLYRRNIFSPTYA 394
           A F ++  RT + KS+ LSF  L      +FG Q L L      +PTYA
Sbjct: 68  AYFRERKIRTPMNKSLLLSFFFLGL--AGVFGNQLLFLIGLTYTNPTYA 114


>At4g04330.1 68417.m00618 expressed protein
          Length = 174

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 6/44 (13%)
 Frame = -2

Query: 412 FFSYLRRKFGFHPAV------QGRKCNFSSRCTGKKVQLFLPGF 299
           + SYL  KFG  P V        RKC  +  C+ K   +++PGF
Sbjct: 12  YLSYLNPKFGKRPLVSYPLMQSSRKCKQTRICSNK---MYVPGF 52


>At3g52250.1 68416.m05742 myb family transcription factor contains
            Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 1677

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +2

Query: 485  ESHI-DLKICVRGIWSGNRAQTHGTALTSLLGLLVIC 592
            + H+ ++ I   G W GNR QT  T+L     LL  C
Sbjct: 1582 QQHLQNVPITSYGFWDGNRIQTGLTSLPESAKLLASC 1618


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,810,646
Number of Sequences: 28952
Number of extensions: 255982
Number of successful extensions: 575
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 575
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)