Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0513
(626 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC20G4.06c |adf1|cof1|cofilin|Schizosaccharomyces pombe|chr 1|... 64 2e-11
SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr 3|||Ma... 34 0.019
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 33 0.034
SPAC637.13c |||cytoskeletal signaling protein|Schizosaccharomyce... 28 1.3
SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr ... 27 2.2
SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun... 27 2.2
SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2 |Schizosacc... 26 5.1
SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr... 25 6.8
SPAC2F7.13c |||tryptophan-tRNA ligase |Schizosaccharomyces pombe... 25 6.8
SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 6.8
SPAC13G7.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 6.8
SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual 25 9.0
SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|... 25 9.0
>SPAC20G4.06c |adf1|cof1|cofilin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 137
Score = 63.7 bits (148), Expect = 2e-11
Identities = 28/63 (44%), Positives = 41/63 (65%)
Frame = +3
Query: 246 HVGASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVE 425
++G + K+ +SW PD A +K KM+YSSS D L+++ G+ IQATD SE + E V
Sbjct: 72 NLGEGVRNKIIFISWSPDVAPIKSKMVYSSSKDTLRRAFTGIGTDIQATDFSEVAYETVL 131
Query: 426 EKL 434
EK+
Sbjct: 132 EKV 134
Score = 52.4 bits (120), Expect = 5e-08
Identities = 27/71 (38%), Positives = 40/71 (56%)
Frame = +1
Query: 16 SGVTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGERNAEYEQFLEDLQKGGTG 195
SGV VS C ++E+K K RYVVF + D K V + +++ FL DL +
Sbjct: 4 SGVKVSPECLEAFQELKLGKSLRYVVFKMNDTKTEIVVEKKSTDKDFDTFLGDLPE---K 60
Query: 196 ECRYGLFDFEY 228
+CRY ++DFE+
Sbjct: 61 DCRYAIYDFEF 71
>SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 328
Score = 33.9 bits (74), Expect = 0.019
Identities = 15/27 (55%), Positives = 21/27 (77%)
Frame = +3
Query: 258 SKKQKLFLMSWCPDTAKVKKKMLYSSS 338
SKK L L+S+ P+ A V++KMLY+SS
Sbjct: 76 SKKNLLQLISYVPENANVRRKMLYASS 102
Score = 28.7 bits (61), Expect = 0.73
Identities = 16/56 (28%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
Frame = +3
Query: 270 KLFLMSWCPDTAKVKKKMLYSSS----FDALKKSL-VGVQKYIQATDLSEASQEAV 422
K+ + CP A VK +M+YSSS D++K L + + I++ D ++ +++ +
Sbjct: 244 KILFIYICPMQATVKHRMVYSSSKLGLLDSIKAELGIVIDGKIESNDAADITEKEI 299
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 33.1 bits (72), Expect = 0.034
Identities = 23/81 (28%), Positives = 34/81 (41%)
Frame = +2
Query: 383 PSDRPLGSVSGGRRREAPRHRSPINSIYTRARDETEPALRHSALTTRGHDTTSRLVLLQR 562
P P S G RR + R R P R R+E +R L R RL L R
Sbjct: 190 PPAEPAESPFGKRRTNSGRFRDPARDPSDRVREEPREWVRRGPLPPRESSERPRLNLKPR 249
Query: 563 KTNSINMIDFTGGRTSCESAR 625
++++N + T T+ S++
Sbjct: 250 SSSNVN-TEATPSATTTTSSK 269
>SPAC637.13c |||cytoskeletal signaling protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 498
Score = 27.9 bits (59), Expect = 1.3
Identities = 12/46 (26%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = -1
Query: 317 LLNLGGVRAPRHQEELLFLASSD-VPWHWCVYSKSNRPYLHSPVPP 183
++N V+A H +E++ ++ + + W Y+K ++H VPP
Sbjct: 238 MMNQTHVKAINHLQEVVRVSEAQTLAGEWTGYAKREPEFIHGSVPP 283
>SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 977
Score = 27.1 bits (57), Expect = 2.2
Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = -1
Query: 356 LFQSVERAR-VQHLLLNLGGVRAPRHQEELLF 264
LF E AR V++LLL L G++A RH + LF
Sbjct: 460 LFNLFEVAREVKNLLLLLEGLKAQRHNKPKLF 491
>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 214
Score = 27.1 bits (57), Expect = 2.2
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = +3
Query: 336 SFDALKKSLVGVQKYIQATDLSEASQ 413
S +AL++ L G + Y+Q+TD++ S+
Sbjct: 188 SLEALQEELEGFEDYVQSTDIAAMSK 213
>SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 830
Score = 25.8 bits (54), Expect = 5.1
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = -1
Query: 377 LLNSDKGLFQSVERARVQHLLLNLGGVRAPRHQEELLFLASSDV 246
++NS++ ++ + +R +Q + R PRH+E +L DV
Sbjct: 367 VINSERTVYNNYQRITLQESPGTVPSGRLPRHREVILLADLVDV 410
>SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 319
Score = 25.4 bits (53), Expect = 6.8
Identities = 14/61 (22%), Positives = 31/61 (50%)
Frame = +1
Query: 43 KTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGERNAEYEQFLEDLQKGGTGECRYGLFDF 222
K + + ++ + K ++ +D K+ D + + + EY F ++L+ TG+ Y DF
Sbjct: 108 KCSSDFLEANVKSQFTTCENKDSKE-DYQILHNKRLEYVSFNDELKSLETGQPLYCFQDF 166
Query: 223 E 225
+
Sbjct: 167 Q 167
>SPAC2F7.13c |||tryptophan-tRNA ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 395
Score = 25.4 bits (53), Expect = 6.8
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = -2
Query: 529 VAACRQGGVSESGFGFVASSCVNAVYWRSV--ARSFSST 419
+A C S++ FGF S + +++ S+ A SFSS+
Sbjct: 180 IAKCITANQSKACFGFTDSDSIGKIHFASIQAAPSFSSS 218
>SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 357
Score = 25.4 bits (53), Expect = 6.8
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Frame = -1
Query: 242 WHWCVYSKSNRPY--LHSPVPPFCRSSRNCSYSALRSPTVSTSICF 111
W++ Y+ S R Y VPP+CR +R+ + CF
Sbjct: 122 WNFVDYALSLRKYGWTDDVVPPYCRKVLTYKSLGIRTAVYVGAFCF 167
>SPAC13G7.09c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 135
Score = 25.4 bits (53), Expect = 6.8
Identities = 17/62 (27%), Positives = 25/62 (40%)
Frame = +2
Query: 341 RRSEKVPCRSSEVHPSDRPLGSVSGGRRREAPRHRSPINSIYTRARDETEPALRHSALTT 520
RR +K S +D + S RR + PR S +Y D EP R ++
Sbjct: 67 RRDQKRKQLISIKQDNDLNVSSERLSRRIDVPRPTSKKKRLYKETPDLDEPGSREKRVSQ 126
Query: 521 RG 526
+G
Sbjct: 127 KG 128
>SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 366
Score = 25.0 bits (52), Expect = 9.0
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = +1
Query: 25 TVSDACKTTYEEIKKDKKHRYV 90
TV D C + IK KH YV
Sbjct: 316 TVEDFCNNIHSSIKSQFKHAYV 337
>SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 584
Score = 25.0 bits (52), Expect = 9.0
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +1
Query: 22 VTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDV 126
VT D KT + +K KH+ V YIR K +D+
Sbjct: 113 VTNDDGTKTKVDSDEKKHKHKNVRDYIR-FKHVDI 146
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,286,678
Number of Sequences: 5004
Number of extensions: 42548
Number of successful extensions: 147
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -