Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0513
(626 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55463| Best HMM Match : OPA3 (HMM E-Value=0) 52 5e-07
SB_30343| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 5e-06
SB_14227| Best HMM Match : Cofilin_ADF (HMM E-Value=0.0013) 45 4e-05
SB_28028| Best HMM Match : Cofilin_ADF (HMM E-Value=2e-20) 37 0.015
SB_35589| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.036
SB_27884| Best HMM Match : Pox_A32 (HMM E-Value=0.61) 30 1.3
SB_44895| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_15490| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_50937| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_37259| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_44623| Best HMM Match : RUN (HMM E-Value=1.6e-15) 29 4.1
SB_57558| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_3240| Best HMM Match : Sec8_exocyst (HMM E-Value=0.48) 28 5.4
SB_20062| Best HMM Match : Tsg101 (HMM E-Value=0.41) 26 6.1
SB_45897| Best HMM Match : Peptidase_C50 (HMM E-Value=2.7e-08) 28 7.1
SB_23095| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_44857| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_43377| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_31695| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_20553| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_20279| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
>SB_55463| Best HMM Match : OPA3 (HMM E-Value=0)
Length = 387
Score = 51.6 bits (118), Expect = 5e-07
Identities = 22/64 (34%), Positives = 41/64 (64%)
Frame = +3
Query: 246 HVGASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVE 425
+V + + KL L+ WCPD ++K +M+ +++F +KK G K ++ + SE S EA++
Sbjct: 321 NVEGADRSKLVLIFWCPDNCEIKSRMVSAATFQDVKKKCPGGAKCLEIQERSELSFEALK 380
Query: 426 EKLR 437
E+L+
Sbjct: 381 EELK 384
>SB_30343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 140
Score = 48.4 bits (110), Expect = 5e-06
Identities = 21/60 (35%), Positives = 37/60 (61%)
Frame = +3
Query: 258 SKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVEEKLR 437
+++ KL L+ WCPD +K KM+ +++F + K G K ++ D + S EA++EKL+
Sbjct: 78 AERSKLVLIFWCPDNCGIKNKMVSAATFKEVMKKCPGGAKCLEIQDRFDLSFEALKEKLK 137
>SB_14227| Best HMM Match : Cofilin_ADF (HMM E-Value=0.0013)
Length = 310
Score = 45.2 bits (102), Expect = 4e-05
Identities = 21/53 (39%), Positives = 31/53 (58%)
Frame = +3
Query: 246 HVGASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSE 404
H A FL C D A +KKKML S+++ LKK G++KY +A+++ E
Sbjct: 246 HRSALSDLVFFLFDRCSDEAPIKKKMLAGSTWEYLKKKFDGLKKYFEASEICE 298
>SB_28028| Best HMM Match : Cofilin_ADF (HMM E-Value=2e-20)
Length = 151
Score = 36.7 bits (81), Expect = 0.015
Identities = 16/57 (28%), Positives = 27/57 (47%)
Frame = +3
Query: 273 LFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVEEKLRAT 443
L +SWC D A ++KKM +S+ D ++K + A D + + + K T
Sbjct: 93 LVFISWCSDKAPIEKKMKLASTQDYVRKKFSEATTSVNANDFDDLDYDEIAAKAEKT 149
Score = 30.7 bits (66), Expect = 1.0
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 7/78 (8%)
Frame = +1
Query: 16 SGVTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDV-----ETVGERNAEYEQ--FLED 174
SG+ V D + +K K H+Y +F I DE + V ++V E ++ F +
Sbjct: 4 SGIKVDDESLKLSQTMKSMKTHKYAIFKICDEANMVVIDQTFKSVVTNTREEDRAIFYQM 63
Query: 175 LQKGGTGECRYGLFDFEY 228
++K E RY L+D ++
Sbjct: 64 VEKLSDREPRYILYDMKF 81
>SB_35589| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 150
Score = 35.5 bits (78), Expect = 0.036
Identities = 16/53 (30%), Positives = 31/53 (58%)
Frame = +3
Query: 273 LFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVEEK 431
L + WC D A +KK+M+ +++ + LK V V+K Q D ++ + + + +K
Sbjct: 93 LVYIFWCSDNAPIKKRMVSAATNELLKTKFV-VKKVFQINDRADLNYDDIADK 144
Score = 34.3 bits (75), Expect = 0.082
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 11/82 (13%)
Frame = +1
Query: 16 SGVTVSDACKTTYEEIK-KDKKHRYVVFYIRDE----------KQIDVETVGERNAEYEQ 162
SG+ + D Y+ ++ K+K H++ F I D+ K++D T E A ++Q
Sbjct: 4 SGIKIDDESLHLYQTMQGKEKSHKFATFKISDDGKMVVIDHILKRVDTHTREEDRAIFDQ 63
Query: 163 FLEDLQKGGTGECRYGLFDFEY 228
LE L E RY L+D +
Sbjct: 64 MLEKL---SDSEPRYILYDLNF 82
>SB_27884| Best HMM Match : Pox_A32 (HMM E-Value=0.61)
Length = 1226
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/52 (34%), Positives = 21/52 (40%)
Frame = -3
Query: 441 WRGASLRRPPETLPRGRSLGCTSELRQGTFSERRXXXXXXXXX*PWRCPGTT 286
W G + R PP RS+ TS L TF ERR W P T+
Sbjct: 855 WGGTAERPPPRQSAPSRSMAITSLLCGSTF-ERRTTVLSMGVVSDWSIPATS 905
>SB_44895| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 237
Score = 29.9 bits (64), Expect = 1.8
Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Frame = -1
Query: 254 SDVPWHWCVYSKSNRPYLHSPVP-PFCRS--SRNCSYSALRSP 135
S V +C YS +RPY HSPV P+C S R YS + P
Sbjct: 104 SPVDRPYC-YSPVDRPYCHSPVDRPYCHSPVDRPYCYSPVDHP 145
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = -1
Query: 254 SDVPWHWCVYSKSNRPYLHSPVP-PFCRS 171
S V +C +S +RPY HSPV P+C S
Sbjct: 140 SPVDHPYC-HSPVDRPYCHSPVDRPYCHS 167
>SB_15490| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 302
Score = 29.9 bits (64), Expect = 1.8
Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 9/96 (9%)
Frame = +2
Query: 365 RSSEVHPSDRP-LGSVSGGRRREAPRHRSPINS-IYTRARDETEP-------ALRHSALT 517
RSS + P R LGS++ R PR RS + S +R R + P + R SA
Sbjct: 183 RSSSISPGMRSSLGSIAPPPRTSTPRSRSTLRSRAGSRIRTPSTPTTTSSRASSRESARG 242
Query: 518 TRGHDTTSRLVLLQRKTNSINMIDFTGGRTSCESAR 625
TR TT + V RK+ N + T +T C + R
Sbjct: 243 TRTTTTTKKCV--TRKSRGRNGSNTT--KTKCVTTR 274
>SB_50937| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2480
Score = 28.7 bits (61), Expect = 4.1
Identities = 19/56 (33%), Positives = 22/56 (39%)
Frame = -3
Query: 435 GASLRRPPETLPRGRSLGCTSELRQGTFSERRXXXXXXXXX*PWRCPGTTTSGRAS 268
G + R PP R + TS L TF ERR W P T +G AS
Sbjct: 651 GTAERLPPRQSAPSRFMAITSLLCGSTF-ERRTTVLSMGVVSDWSVPATRCAGTAS 705
>SB_37259| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1690
Score = 28.7 bits (61), Expect = 4.1
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +3
Query: 342 DALKKSLVGVQKYIQATDLSEASQEAVEEKLRATDRQ*TAFTHELATK 485
D LKK + +QK +L +AS E EEK + + + F H++A K
Sbjct: 403 DGLKKRMEQIQK-----ELQQASSELEEEKKKTENLLSSIFPHDVANK 445
>SB_44623| Best HMM Match : RUN (HMM E-Value=1.6e-15)
Length = 1277
Score = 28.7 bits (61), Expect = 4.1
Identities = 8/24 (33%), Positives = 16/24 (66%)
Frame = +3
Query: 231 APVPGHVGASKKQKLFLMSWCPDT 302
+P+PG++ K +L ++ W P+T
Sbjct: 498 SPIPGYLSLHKSNELLVLKWTPNT 521
>SB_57558| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 733
Score = 28.3 bits (60), Expect = 5.4
Identities = 24/71 (33%), Positives = 27/71 (38%)
Frame = +2
Query: 341 RRSEKVPCRSSEVHPSDRPLGSVSGGRRREAPRHRSPINSIYTRARDETEPALRHSALTT 520
RRS + PCR S +D LG R R SP S T E AL
Sbjct: 238 RRSSEAPCRQSRRSSNDARLGQFVEKRNFHGNRFVSPKKSKKTEVNREDSIEQYLEALQQ 297
Query: 521 RGHDTTSRLVL 553
+TSRL L
Sbjct: 298 EA--STSRLKL 306
>SB_3240| Best HMM Match : Sec8_exocyst (HMM E-Value=0.48)
Length = 643
Score = 28.3 bits (60), Expect = 5.4
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2
Query: 146 TPNTNSSSRICRRAVPGNADMAC 214
+P T SSR C VPG+AD C
Sbjct: 14 SPRTGRSSRSCSIPVPGHADHHC 36
>SB_20062| Best HMM Match : Tsg101 (HMM E-Value=0.41)
Length = 686
Score = 25.8 bits (54), Expect(2) = 6.1
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +2
Query: 425 REAPRHRSPINSIYTRARDETEPALRHS 508
R+AP HR+P + E+ PA +H+
Sbjct: 425 RQAPGHRTPDRHTHNNHAPESYPAAQHT 452
Score = 20.6 bits (41), Expect(2) = 6.1
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = +2
Query: 266 TEALPDVVVPGHR 304
TE PD PGHR
Sbjct: 419 TEYYPDRQAPGHR 431
>SB_45897| Best HMM Match : Peptidase_C50 (HMM E-Value=2.7e-08)
Length = 1907
Score = 27.9 bits (59), Expect = 7.1
Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
Frame = +3
Query: 231 APVPGHVGASKKQKLFLMSWCPDTAKVKKKMLYSSSFDAL----KKSLVGVQKYIQATDL 398
AP G SKK K + CP T V K +Y F + + L+ K +A D+
Sbjct: 1253 APRTKSKGKSKKAKKDDSAECPITTAVTAKAMYGVYFAEVFVLNAEILLSRGKLTKARDV 1312
Query: 399 SEASQEAVEEKLR 437
+ A + VEE R
Sbjct: 1313 TAAGLDTVEEVRR 1325
>SB_23095| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2722
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = -2
Query: 307 LAVSGHHDIRKSFCFLLAPTC-PGTGACIQSQTGHICIP 194
+A+S HD RKS C L C P + Q +CIP
Sbjct: 1612 VAISNQHDDRKSTCGALPGVCGPNKISANVDQEVSLCIP 1650
>SB_44857| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 160
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Frame = -1
Query: 461 CCLLAIGGAELLFDGLLRRFREVGRLDVLLNSDKGLFQS---VERARVQHLLLNLGG 300
CC+L + E L + +GR D + + G F + R +HL+ +GG
Sbjct: 85 CCILRMSMTEALAGATINAAASLGRADTHGSLEVGKFADMVVINAERWEHLIYQIGG 141
>SB_43377| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 625
Score = 27.5 bits (58), Expect = 9.4
Identities = 18/41 (43%), Positives = 22/41 (53%)
Frame = -1
Query: 467 CKCCLLAIGGAELLFDGLLRRFREVGRLDVLLNSDKGLFQS 345
C CLL G + L DGL RR G ++VLL D G +S
Sbjct: 348 CIACLLFGGSRKRLPDGLTRR----GDINVLLLGDPGTAKS 384
>SB_31695| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 320
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = +3
Query: 333 SSFDALKKSLVGVQKYIQATDLSEASQEAVEEKLRATDRQ*TAFTHELATKPN 491
SSF A + L+ Y + TD E + ++ + ATD T+ H +P+
Sbjct: 244 SSFTAEIRDLIETSSYTKDTDFDEETSSLLKSQTDATDDTMTSDEHCRTQEPS 296
>SB_20553| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 445
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -1
Query: 233 CVYSKSNRPYLHSPVPPFCRSSRNCSYSALRS 138
CVY PY+ S +PP +S S LRS
Sbjct: 292 CVYGWVALPYMSSTLPPVAYTSSGLSAGPLRS 323
>SB_20279| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1100
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = -2
Query: 544 AASGVVAACRQGGVSESGFGFVASSCVNA 458
AA+G+V A R G+ + G+G + + C+ A
Sbjct: 740 AAAGIVMAHRVVGLHQGGYGHILAECMFA 768
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,063,450
Number of Sequences: 59808
Number of extensions: 367655
Number of successful extensions: 1138
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1021
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1137
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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