Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0513
         (626 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L18963-1|AAC14457.1|  152|Caenorhabditis elegans unc-60 protein.       68   5e-12
AF024494-2|AAL02463.1|  152|Caenorhabditis elegans Uncoordinated...    68   5e-12
L18963-2|AAC14458.1|  165|Caenorhabditis elegans unc-60 protein.       50   2e-06
AF024494-3|AAL02461.1|  165|Caenorhabditis elegans Uncoordinated...    50   2e-06
AF024494-1|AAL02462.2|  212|Caenorhabditis elegans Uncoordinated...    47   1e-05
Z48717-10|CAA88612.2|  423|Caenorhabditis elegans Hypothetical p...    29   2.1  
Z48584-9|CAA88478.2|  423|Caenorhabditis elegans Hypothetical pr...    29   2.1  
Z82257-1|CAB05120.2| 1043|Caenorhabditis elegans Hypothetical pr...    27   8.3  
U80450-11|AAM15595.1|  664|Caenorhabditis elegans Temporarily as...    27   8.3  
U80450-9|AAK77615.1| 1112|Caenorhabditis elegans Temporarily ass...    27   8.3  
U80450-8|AAK77616.1|  949|Caenorhabditis elegans Temporarily ass...    27   8.3  
AJ271057-1|CAB65957.1| 1043|Caenorhabditis elegans Ack related n...    27   8.3  
AC025723-3|AAK29935.1|  254|Caenorhabditis elegans Hypothetical ...    27   8.3  

>L18963-1|AAC14457.1|  152|Caenorhabditis elegans unc-60 protein.
          Length = 152

 Score = 68.1 bits (159), Expect = 5e-12
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 3/82 (3%)
 Frame = +1

Query: 10  MASGVTVSDACKTTYEEIKKDKKHRYVVFYI-RDEKQIDVETVGERNAEYEQFLEDLQK- 183
           MASGV V  +CK  Y+ +    +H Y++F I +++  I VE VGE+NA Y +F+E+++K 
Sbjct: 1   MASGVKVDPSCKNAYDLLHNKHQHSYIIFKIDKNDTAIVVEKVGEKNAPYAEFVEEMKKL 60

Query: 184 -GGTGECRYGLFDFEYTHQCQG 246
                ECRY   D E T Q QG
Sbjct: 61  VEDGKECRYAAVDVEVTVQRQG 82



 Score = 51.6 bits (118), Expect = 4e-07
 Identities = 26/71 (36%), Positives = 45/71 (63%), Gaps = 2/71 (2%)
 Frame = +3

Query: 243 GHVGASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQK--YIQATDLSEASQE 416
           G  G S   K+  + +CPD A V+++MLY+SS  ALK SL G++    +QA+++S+  ++
Sbjct: 82  GAEGTSTLNKVIFVQYCPDNAPVRRRMLYASSVRALKASL-GLESLFQVQASEMSDLDEK 140

Query: 417 AVEEKLRATDR 449
           +V+  L +  R
Sbjct: 141 SVKSDLMSNQR 151


>AF024494-2|AAL02463.1|  152|Caenorhabditis elegans Uncoordinated
           protein 60, isoform c protein.
          Length = 152

 Score = 68.1 bits (159), Expect = 5e-12
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 3/82 (3%)
 Frame = +1

Query: 10  MASGVTVSDACKTTYEEIKKDKKHRYVVFYI-RDEKQIDVETVGERNAEYEQFLEDLQK- 183
           MASGV V  +CK  Y+ +    +H Y++F I +++  I VE VGE+NA Y +F+E+++K 
Sbjct: 1   MASGVKVDPSCKNAYDLLHNKHQHSYIIFKIDKNDTAIVVEKVGEKNAPYAEFVEEMKKL 60

Query: 184 -GGTGECRYGLFDFEYTHQCQG 246
                ECRY   D E T Q QG
Sbjct: 61  VEDGKECRYAAVDVEVTVQRQG 82



 Score = 51.6 bits (118), Expect = 4e-07
 Identities = 26/71 (36%), Positives = 45/71 (63%), Gaps = 2/71 (2%)
 Frame = +3

Query: 243 GHVGASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQK--YIQATDLSEASQE 416
           G  G S   K+  + +CPD A V+++MLY+SS  ALK SL G++    +QA+++S+  ++
Sbjct: 82  GAEGTSTLNKVIFVQYCPDNAPVRRRMLYASSVRALKASL-GLESLFQVQASEMSDLDEK 140

Query: 417 AVEEKLRATDR 449
           +V+  L +  R
Sbjct: 141 SVKSDLMSNQR 151


>L18963-2|AAC14458.1|  165|Caenorhabditis elegans unc-60 protein.
          Length = 165

 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 27/62 (43%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
 Frame = +3

Query: 252 GASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSL-VGVQKYIQATDLSEASQEAVEE 428
           G SK  K+  +  CPD A +KKKM+Y+SS  A+K SL  G     Q +D SE S + +  
Sbjct: 97  GTSKMDKIIFLQICPDGASIKKKMVYASSAAAIKTSLGTGKILQFQVSDESEMSHKELLN 156

Query: 429 KL 434
           KL
Sbjct: 157 KL 158



 Score = 41.1 bits (92), Expect = 6e-04
 Identities = 26/91 (28%), Positives = 52/91 (57%), Gaps = 17/91 (18%)
 Frame = +1

Query: 10  MASGVTVSDACKTTYEEIKKDKK-HRYVVFYIRDEKQIDVETVGERN------------- 147
           M+SGV V    +T+++++ + +K +RY++F I DE ++ VE    ++             
Sbjct: 1   MSSGVMVDPDVQTSFQKLSEGRKEYRYIIFKI-DENKVIVEAAVTQDQLGITGDDYDDSS 59

Query: 148 -AEYEQFLEDLQK--GGTGECRYGLFDFEYT 231
            A +++F+ED++       +CRY +FDF++T
Sbjct: 60  KAAFDKFVEDVKSRTDNLTDCRYAVFDFKFT 90


>AF024494-3|AAL02461.1|  165|Caenorhabditis elegans Uncoordinated
           protein 60, isoform a protein.
          Length = 165

 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 27/62 (43%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
 Frame = +3

Query: 252 GASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSL-VGVQKYIQATDLSEASQEAVEE 428
           G SK  K+  +  CPD A +KKKM+Y+SS  A+K SL  G     Q +D SE S + +  
Sbjct: 97  GTSKMDKIIFLQICPDGASIKKKMVYASSAAAIKTSLGTGKILQFQVSDESEMSHKELLN 156

Query: 429 KL 434
           KL
Sbjct: 157 KL 158



 Score = 41.1 bits (92), Expect = 6e-04
 Identities = 26/91 (28%), Positives = 52/91 (57%), Gaps = 17/91 (18%)
 Frame = +1

Query: 10  MASGVTVSDACKTTYEEIKKDKK-HRYVVFYIRDEKQIDVETVGERN------------- 147
           M+SGV V    +T+++++ + +K +RY++F I DE ++ VE    ++             
Sbjct: 1   MSSGVMVDPDVQTSFQKLSEGRKEYRYIIFKI-DENKVIVEAAVTQDQLGITGDDYDDSS 59

Query: 148 -AEYEQFLEDLQK--GGTGECRYGLFDFEYT 231
            A +++F+ED++       +CRY +FDF++T
Sbjct: 60  KAAFDKFVEDVKSRTDNLTDCRYAVFDFKFT 90


>AF024494-1|AAL02462.2|  212|Caenorhabditis elegans Uncoordinated
           protein 60, isoform b protein.
          Length = 212

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 25/56 (44%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
 Frame = +3

Query: 252 GASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSL-VGVQKYIQATDLSEASQE 416
           G SK  K+  +  CPD A +KKKM+Y+SS  A+K SL  G     Q +D SE S +
Sbjct: 97  GTSKMDKIIFLQICPDGASIKKKMVYASSAAAIKTSLGTGKILQFQVSDESEMSHK 152



 Score = 45.6 bits (103), Expect = 3e-05
 Identities = 23/59 (38%), Positives = 41/59 (69%), Gaps = 2/59 (3%)
 Frame = +3

Query: 279 LMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQK--YIQATDLSEASQEAVEEKLRATDR 449
           L++ CPD A V+++MLY+SS  ALK SL G++    +QA+++S+  +++V+  L +  R
Sbjct: 154 LLNNCPDNAPVRRRMLYASSVRALKASL-GLESLFQVQASEMSDLDEKSVKSDLMSNQR 211



 Score = 41.1 bits (92), Expect = 6e-04
 Identities = 26/91 (28%), Positives = 52/91 (57%), Gaps = 17/91 (18%)
 Frame = +1

Query: 10  MASGVTVSDACKTTYEEIKKDKK-HRYVVFYIRDEKQIDVETVGERN------------- 147
           M+SGV V    +T+++++ + +K +RY++F I DE ++ VE    ++             
Sbjct: 1   MSSGVMVDPDVQTSFQKLSEGRKEYRYIIFKI-DENKVIVEAAVTQDQLGITGDDYDDSS 59

Query: 148 -AEYEQFLEDLQK--GGTGECRYGLFDFEYT 231
            A +++F+ED++       +CRY +FDF++T
Sbjct: 60  KAAFDKFVEDVKSRTDNLTDCRYAVFDFKFT 90


>Z48717-10|CAA88612.2|  423|Caenorhabditis elegans Hypothetical
           protein ZK1321.4 protein.
          Length = 423

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -1

Query: 224 SKSNRPYLHSPVPPFCRSSRNCSYSALRSPTVST 123
           S  N P  HSP PPF  S  N SY+ ++  T +T
Sbjct: 188 SHHNIPIRHSPAPPFTTS--NSSYNNIKKSTDNT 219


>Z48584-9|CAA88478.2|  423|Caenorhabditis elegans Hypothetical
           protein ZK1321.4 protein.
          Length = 423

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -1

Query: 224 SKSNRPYLHSPVPPFCRSSRNCSYSALRSPTVST 123
           S  N P  HSP PPF  S  N SY+ ++  T +T
Sbjct: 188 SHHNIPIRHSPAPPFTTS--NSSYNNIKKSTDNT 219


>Z82257-1|CAB05120.2| 1043|Caenorhabditis elegans Hypothetical
           protein C01C7.1 protein.
          Length = 1043

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 398 LGSVSGGRRREAPRHRSPINSIYTRARDETEPA 496
           L ++S  R+   P  R P+ ++Y R +D   PA
Sbjct: 688 LTALSSSRKDPIPAPRGPVAAVYARGKDIPTPA 720


>U80450-11|AAM15595.1|  664|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 163, isoform d protein.
          Length = 664

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -3

Query: 447 DRWRGASLRRPPETLPRGRSLGCTSELRQGT 355
           +RWRG    +PP   PR  S    + L +GT
Sbjct: 435 ERWRGRMRGKPPTPPPRESSASPVNSLPRGT 465


>U80450-9|AAK77615.1| 1112|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 163, isoform a protein.
          Length = 1112

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -3

Query: 447 DRWRGASLRRPPETLPRGRSLGCTSELRQGT 355
           +RWRG    +PP   PR  S    + L +GT
Sbjct: 435 ERWRGRMRGKPPTPPPRESSASPVNSLPRGT 465


>U80450-8|AAK77616.1|  949|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 163, isoform c protein.
          Length = 949

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -3

Query: 447 DRWRGASLRRPPETLPRGRSLGCTSELRQGT 355
           +RWRG    +PP   PR  S    + L +GT
Sbjct: 435 ERWRGRMRGKPPTPPPRESSASPVNSLPRGT 465


>AJ271057-1|CAB65957.1| 1043|Caenorhabditis elegans Ack related
           non-receptor tyrosinekinase protein.
          Length = 1043

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 398 LGSVSGGRRREAPRHRSPINSIYTRARDETEPA 496
           L ++S  R+   P  R P+ ++Y R +D   PA
Sbjct: 688 LTALSSSRKDPIPAPRGPVAAVYARGKDIPTPA 720


>AC025723-3|AAK29935.1|  254|Caenorhabditis elegans Hypothetical
           protein Y54F10AM.6 protein.
          Length = 254

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -1

Query: 500 GERVRFRRELVCKCC 456
           G+ ++FR E VC+CC
Sbjct: 200 GKNIKFRTEKVCRCC 214


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,027,663
Number of Sequences: 27780
Number of extensions: 252163
Number of successful extensions: 977
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 970
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)