Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0513
         (626 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    25   0.80 
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    24   1.1  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    23   2.4  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    23   3.2  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   7.4  
AB264334-1|BAF44089.1|   30|Apis mellifera ecdysone-induced prot...    21   9.8  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   9.8  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    21   9.8  

>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 24.6 bits (51), Expect = 0.80
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -1

Query: 533 CRGRVSSGRSVGERVRFRRELVCKCC 456
           CRGR SS   V     ++ E  C CC
Sbjct: 53  CRGRCSSYLQVSGSKIWQMERSCMCC 78


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +2

Query: 479 DETEPALRHSALTTRGHDTTSRLVLLQRKTN-SINMIDFTGGRTSCESA 622
           +E++   RH  +T  GH    +  LL    N SI   +F GG T C  A
Sbjct: 137 NESQLIKRHPIVTIMGHVDHGKTTLLDALRNTSIAKSEF-GGITQCIGA 184


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -1

Query: 248 VPWHWCVYSKSNRPYLH 198
           +P HW VY + N P LH
Sbjct: 33  IPEHWLVYPEPN-PSLH 48


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 437 RHRSPINSIYTRARDETEPALRHSALT 517
           R+RS    ++ R  D+TE  L   A+T
Sbjct: 40  RYRSVATQVFNRFGDDTESKLPVKAIT 66


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 508 GVSESGFGFVASSCVNAVYWRSV 440
           GV+  G G VAS   +A  W+S+
Sbjct: 915 GVAVPGSGIVASGQQHAGGWQSI 937


>AB264334-1|BAF44089.1|   30|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 30

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/23 (39%), Positives = 10/23 (43%)
 Frame = -2

Query: 535 GVVAACRQGGVSESGFGFVASSC 467
           G    CR  G   SGF +   SC
Sbjct: 4   GTTVLCRVCGDKASGFHYGVHSC 26


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/23 (39%), Positives = 10/23 (43%)
 Frame = -2

Query: 535 GVVAACRQGGVSESGFGFVASSC 467
           G    CR  G   SGF +   SC
Sbjct: 62  GTTVLCRVCGDKASGFHYGVHSC 84


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -1

Query: 185 PFCRSSRNCSYSALR 141
           P+CR + +C YS  R
Sbjct: 9   PYCRRNFSCYYSLKR 23


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,341
Number of Sequences: 438
Number of extensions: 3205
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)