Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0511
         (669 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q7VHW1 Cluster: 5-methyltetrahydropteroyltriglutamate-h...    33   4.7  
UniRef50_Q7RDI5 Cluster: Putative yir3 protein; n=1; Plasmodium ...    33   8.2  

>UniRef50_Q7VHW1 Cluster:
           5-methyltetrahydropteroyltriglutamate-homocysteine
           methyltransferase; n=8; Epsilonproteobacteria|Rep:
           5-methyltetrahydropteroyltriglutamate-homocysteine
           methyltransferase - Helicobacter hepaticus
          Length = 758

 Score = 33.5 bits (73), Expect = 4.7
 Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = -3

Query: 382 LSSFFQHTTN-REILCQSPFFTINQDTYFLEKNKDHWQIINKIDQAFF 242
           +S+FF+H+    EIL Q+  + I  D  + EKNK   ++I K ++  +
Sbjct: 239 VSTFFEHSNELSEILLQTDIYGIGLDFIYGEKNKQSLELIGKSNKVLY 286


>UniRef50_Q7RDI5 Cluster: Putative yir3 protein; n=1; Plasmodium
           yoelii yoelii|Rep: Putative yir3 protein - Plasmodium
           yoelii yoelii
          Length = 324

 Score = 32.7 bits (71), Expect = 8.2
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +3

Query: 15  KDCGDMLCCSVPPLHS-*IPNPSINFYKIILLLKPTVSLRVNQSSLAHRLIVV 170
           K C D+ C  +PPL S      ++NF++   L  P  S   + SS+ ++L +V
Sbjct: 228 KKCSDVSCKDIPPLQSIEKAEINVNFHEQSKLTSPQTSEDTSSSSVTNKLFIV 280


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 585,884,912
Number of Sequences: 1657284
Number of extensions: 11030967
Number of successful extensions: 21804
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 21149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21797
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 51239674196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)