Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0510
         (718 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            25   0.71 
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   1.1  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    24   1.2  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    24   1.2  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    24   1.2  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    24   1.2  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    22   6.7  

>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 25.0 bits (52), Expect = 0.71
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -2

Query: 636 CPHRWIKIFSAVSLKSTLVTGYELSN 559
           C HRW +I++ V  ++ LV G ++ N
Sbjct: 380 CEHRWRQIYNMVRFRN-LVKGTKIDN 404


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.8 bits (44), Expect(2) = 1.1
 Identities = 7/26 (26%), Positives = 15/26 (57%)
 Frame = +2

Query: 245 QALKTNINMECVWSMRECDGDERSHG 322
           Q +K+N+ +  +W+  +   DE  +G
Sbjct: 71  QIMKSNVWLRFIWTDYQLQWDEADYG 96



 Score = 20.6 bits (41), Expect(2) = 1.1
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = +2

Query: 203 SQANFILKANIWL 241
           ++ N I+K+N+WL
Sbjct: 67  NEKNQIMKSNVWL 79


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +3

Query: 93  DLSSRHQRKGSCY-FICSTNIKLVCANYVVGRTPRRN 200
           +L++ +   G C  FI ++ ++ VC NYV  + P  N
Sbjct: 359 NLTAMNVWDGVCMCFIYASLLEFVCVNYVGRKRPMHN 395


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +3

Query: 93  DLSSRHQRKGSCY-FICSTNIKLVCANYVVGRTPRRN 200
           +L++ +   G C  FI ++ ++ VC NYV  + P  N
Sbjct: 328 NLTAMNVWDGVCMCFIYASLLEFVCVNYVGRKRPMHN 364


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +3

Query: 93  DLSSRHQRKGSCY-FICSTNIKLVCANYVVGRTPRRN 200
           +L++ +   G C  FI ++ ++ VC NYV  + P  N
Sbjct: 379 NLTAMNVWDGVCMCFIYASLLEFVCVNYVGRKRPMHN 415


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +3

Query: 93  DLSSRHQRKGSCY-FICSTNIKLVCANYVVGRTPRRN 200
           +L++ +   G C  FI ++ ++ VC NYV  + P  N
Sbjct: 328 NLTAMNVWDGVCMCFIYASLLEFVCVNYVGRKRPMHN 364


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -1

Query: 541 FPCIP*FYGVISEAETKSSGPLLAPETEFT 452
           F  +P    VI+  +T + GPLLAP  ++T
Sbjct: 81  FNGVPSSLNVITN-KTGNGGPLLAPYPDWT 109


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,936
Number of Sequences: 438
Number of extensions: 4560
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)