BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0506 (639 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomy... 27 1.7 SPBC18H10.10c |cwc16||complexed with Cdc5 protein Cwf16|Schizosa... 27 3.0 SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom... 26 4.0 SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce... 26 5.3 SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 25 7.0 >SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomyces pombe|chr 1|||Manual Length = 523 Score = 27.5 bits (58), Expect = 1.7 Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 4/72 (5%) Frame = +3 Query: 273 LASLLQREAL---CDVTLACDGETVKAHQTILSACSPYFESIFLQNSHPHPIIFLKDVRF 443 + SLL AL D+ A V AH+ L+A S YF+S F + I +K F Sbjct: 154 ITSLLSNSALHFTTDIVFAGQYGRVFAHKFYLAARSSYFKSKFSKLGPSEHEIEVK--HF 211 Query: 444 A-EMKSLLDFMY 476 A E +S+L ++Y Sbjct: 212 AKEFESILRYLY 223 >SPBC18H10.10c |cwc16||complexed with Cdc5 protein Cwf16|Schizosaccharomyces pombe|chr 2|||Manual Length = 294 Score = 26.6 bits (56), Expect = 3.0 Identities = 7/26 (26%), Positives = 17/26 (65%) Frame = -2 Query: 296 LSLQKTRKHIGQIVGWLFQRKQNCWS 219 L+ QK+ KH ++ +++++ + WS Sbjct: 126 LTQQKSEKHNSSVINFIYEKNERLWS 151 >SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pombe|chr 1|||Manual Length = 355 Score = 26.2 bits (55), Expect = 4.0 Identities = 12/34 (35%), Positives = 19/34 (55%) Frame = -2 Query: 638 RTPRGIGSPRPPLASIALPTSDSMYCSLSNL*LV 537 R + S PPL+ ++LPT D Y S+ + L+ Sbjct: 250 RVKKRPASESPPLSPLSLPTDDLYYQSIEDKSLI 283 >SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces pombe|chr 3|||Manual Length = 1347 Score = 25.8 bits (54), Expect = 5.3 Identities = 22/55 (40%), Positives = 27/55 (49%), Gaps = 6/55 (10%) Frame = +3 Query: 246 QPPNNLT-DVLASLLQREALCDVTLAC-----DGETVKAHQTILSACSPYFESIF 392 QP +LT D+L LC+ T+ DGE +KAH LS S YF S F Sbjct: 734 QPLLSLTNDILQLYNNFYVLCEETMDTVIKLKDGE-LKAHGLFLSLRSEYFSSYF 787 >SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit Bgs4|Schizosaccharomyces pombe|chr 3|||Manual Length = 1955 Score = 25.4 bits (53), Expect = 7.0 Identities = 9/26 (34%), Positives = 19/26 (73%) Frame = +1 Query: 313 LSLVMERQSRHTRQYYQHAHHILKAY 390 L + M+R ++ T++ Y++A +L+AY Sbjct: 1063 LVVSMQRYAKFTKEEYENAEFLLRAY 1088 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,670,230 Number of Sequences: 5004 Number of extensions: 54891 Number of successful extensions: 154 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 153 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 154 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 285732116 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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