Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0506
         (639 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomy...    27   1.7  
SPBC18H10.10c |cwc16||complexed with Cdc5 protein Cwf16|Schizosa...    27   3.0  
SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom...    26   4.0  
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    26   5.3  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    25   7.0  

>SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 523

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
 Frame = +3

Query: 273 LASLLQREAL---CDVTLACDGETVKAHQTILSACSPYFESIFLQNSHPHPIIFLKDVRF 443
           + SLL   AL    D+  A     V AH+  L+A S YF+S F +       I +K   F
Sbjct: 154 ITSLLSNSALHFTTDIVFAGQYGRVFAHKFYLAARSSYFKSKFSKLGPSEHEIEVK--HF 211

Query: 444 A-EMKSLLDFMY 476
           A E +S+L ++Y
Sbjct: 212 AKEFESILRYLY 223


>SPBC18H10.10c |cwc16||complexed with Cdc5 protein
           Cwf16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 294

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 7/26 (26%), Positives = 17/26 (65%)
 Frame = -2

Query: 296 LSLQKTRKHIGQIVGWLFQRKQNCWS 219
           L+ QK+ KH   ++ +++++ +  WS
Sbjct: 126 LTQQKSEKHNSSVINFIYEKNERLWS 151


>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 355

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -2

Query: 638 RTPRGIGSPRPPLASIALPTSDSMYCSLSNL*LV 537
           R  +   S  PPL+ ++LPT D  Y S+ +  L+
Sbjct: 250 RVKKRPASESPPLSPLSLPTDDLYYQSIEDKSLI 283


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1347

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 22/55 (40%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
 Frame = +3

Query: 246 QPPNNLT-DVLASLLQREALCDVTLAC-----DGETVKAHQTILSACSPYFESIF 392
           QP  +LT D+L        LC+ T+       DGE +KAH   LS  S YF S F
Sbjct: 734 QPLLSLTNDILQLYNNFYVLCEETMDTVIKLKDGE-LKAHGLFLSLRSEYFSSYF 787


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
            Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 9/26 (34%), Positives = 19/26 (73%)
 Frame = +1

Query: 313  LSLVMERQSRHTRQYYQHAHHILKAY 390
            L + M+R ++ T++ Y++A  +L+AY
Sbjct: 1063 LVVSMQRYAKFTKEEYENAEFLLRAY 1088


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,670,230
Number of Sequences: 5004
Number of extensions: 54891
Number of successful extensions: 154
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)