Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0506
         (639 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      92   5e-21
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          90   1e-20
AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.      26   0.35 
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          22   4.4  
DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein ...    22   5.8  
AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein ...    22   5.8  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   5.8  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 91.9 bits (218), Expect = 5e-21
 Identities = 41/97 (42%), Positives = 62/97 (63%)
 Frame = +3

Query: 255 NNLTDVLASLLQREALCDVTLACDGETVKAHQTILSACSPYFESIFLQNSHPHPIIFLKD 434
           +++T    +L   E   DVTLACDG ++KAH+ +LSACSPYF  +       HP+I L+D
Sbjct: 16  SSITSAFENLRDDEDFVDVTLACDGRSLKAHRVVLSACSPYFRELLKSTPCKHPVIVLQD 75

Query: 435 VRFAEMKSLLDFMYKGEVNVGQNMLQCS*KLQKVYKL 545
           V F+++ +L++F+Y GEVNV Q  L    K  +V ++
Sbjct: 76  VAFSDLHALVEFIYHGEVNVHQRSLSSFLKTAEVLRV 112



 Score = 25.8 bits (54), Expect = 0.35
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = +1

Query: 223 QQFCLRWNNH 252
           Q FCLRWNN+
Sbjct: 5   QHFCLRWNNY 14



 Score = 25.4 bits (53), Expect = 0.47
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 515 FLKTAESLQVRGLTENNTLNPKSE 586
           FLKTAE L+V GLT+      + E
Sbjct: 103 FLKTAEVLRVSGLTQQADQTDRDE 126


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 90.2 bits (214), Expect = 1e-20
 Identities = 42/87 (48%), Positives = 61/87 (70%), Gaps = 1/87 (1%)
 Frame = +3

Query: 255 NNLTDVLASLLQREALCDVTLACDGETVKAHQTILSACSPYFESIFLQNSHPHP-IIFLK 431
           +N+T V   LLQ EA  DVTLAC+  ++KAH+ +LSACS YF+ + L N   HP II  +
Sbjct: 20  SNMTSVFHQLLQTEAFVDVTLACNEASLKAHKVVLSACSSYFQKLLLSNPCKHPTIIMPQ 79

Query: 432 DVRFAEMKSLLDFMYKGEVNVGQNMLQ 512
           DV F ++K +++F+Y+GE++V Q  LQ
Sbjct: 80  DVCFNDLKFIIEFVYRGEIDVSQAELQ 106



 Score = 24.6 bits (51), Expect = 0.82
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +1

Query: 223 QQFCLRWNNH 252
           Q +CLRWNN+
Sbjct: 9   QHYCLRWNNY 18



 Score = 22.2 bits (45), Expect = 4.4
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = +2

Query: 518 LKTAESLQVRGLTE--NNTLNPKSEERSTP 601
           LKTA+ L+++GL E   +   P S   S+P
Sbjct: 109 LKTADQLKIKGLCEVPESRDGPPSVSLSSP 138



 Score = 21.8 bits (44), Expect = 5.8
 Identities = 13/35 (37%), Positives = 15/35 (42%)
 Frame = -3

Query: 463 SNDFISANRTSLRNIMGCGCEFCRNMLSKYGEHAD 359
           +ND  + N  S  N    G  FC   L  YG H D
Sbjct: 254 ANDNGNGNGASNNN--NNGDMFCHTGLGHYGHHPD 286


>AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.
          Length = 39

 Score = 25.8 bits (54), Expect = 0.35
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = +1

Query: 223 QQFCLRWNNH 252
           Q FCLRWNN+
Sbjct: 5   QHFCLRWNNY 14



 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 255 NNLTDVLASLLQREALCDVTLACD 326
           +++T    +L   E   DVTLAC+
Sbjct: 16  SSITSAFENLRDDEDFVDVTLACE 39


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 6/15 (40%), Positives = 12/15 (80%)
 Frame = +3

Query: 594 RRQWWARRTYPARSS 638
           R++WW+R   PA+++
Sbjct: 42  RKRWWSRPREPAQTT 56


>DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein 2
           protein.
          Length = 117

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 440 SYIFKEYNGMWMRILQEYA 384
           S+I + Y   W +I+Q+YA
Sbjct: 96  SHIQRTYPKEWSKIVQQYA 114


>AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein
           protein.
          Length = 117

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 440 SYIFKEYNGMWMRILQEYA 384
           S+I + Y   W +I+Q+YA
Sbjct: 96  SHIQRTYPKEWSKIVQQYA 114


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = +1

Query: 184 KQARSLTLAPTMDQQFCLRWNNHPTI 261
           K    L   P++DQ + L W N   I
Sbjct: 590 KNPVQLWYVPSLDQVWILNWRNQKDI 615


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,008
Number of Sequences: 438
Number of extensions: 3726
Number of successful extensions: 15
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)