Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0505
         (696 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.10 |||VanZ-like family protein|Schizosaccharomyces pomb...    27   1.9  
SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces po...    26   5.9  
SPAC15A10.13 |ppk3||serine/threonine protein kinase Ppk3|Schizos...    26   5.9  
SPCC965.11c |||amino acid transporter |Schizosaccharomyces pombe...    25   7.8  

>SPAC11E3.10 |||VanZ-like family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 162

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = -1

Query: 441 SEYIFEFLRYFLRQRHLLLPNISN*TYGRVKNILKH*KNLERIGFRRH*H 292
           SE++  FL Y       ++ N+   +   + NIL H + LE+I  +R+ H
Sbjct: 83  SEFVQSFLTYRTFDLFDIVANLLGCSLALLLNILYHKRRLEKIRLQRYGH 132


>SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 674

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +2

Query: 131 FQNILPRHHVPLITSVNKRWR 193
           F  I+ R+++P++ S N RW+
Sbjct: 9   FAFIIQRNYIPVVNSQNTRWK 29


>SPAC15A10.13 |ppk3||serine/threonine protein kinase
           Ppk3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 637

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +3

Query: 246 SENTLEILLSRLLLFDVSDDENRYAPSFFNALKYSLHDH 362
           +E+  +  LSR+  F++ + EN  AP+ FN   +S   H
Sbjct: 517 AEDVTDQFLSRIKNFNLGEKENVSAPAKFNGSFWSKFIH 555


>SPCC965.11c |||amino acid transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 537

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -1

Query: 603 YSFKQTISFIISVLYTDIQNFLIIK 529
           Y F Q I F+I ++ T +Q + + K
Sbjct: 436 YPFPQLIGFVIGIILTLVQGWTVFK 460


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,350,414
Number of Sequences: 5004
Number of extensions: 40568
Number of successful extensions: 82
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)