Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0505
         (696 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g50780.1 68414.m05711 hypothetical protein weak similarity to...    31   0.55 
At3g46470.1 68416.m05038 hypothetical protein                          28   6.8  

>At1g50780.1 68414.m05711 hypothetical protein weak similarity to
           aldehyde oxidase [Arabidopsis thaliana] GI:3172025
          Length = 323

 Score = 31.5 bits (68), Expect = 0.55
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = -1

Query: 603 YSFKQTISFIISVLYTDIQNFLIIKYYQ 520
           +  KQTI ++IS+ Y+D+ NF+ +  YQ
Sbjct: 8   FIMKQTILYLISIPYSDVNNFVGVLRYQ 35


>At3g46470.1 68416.m05038 hypothetical protein 
          Length = 199

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/60 (23%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = +3

Query: 285 LFDVSDDENRYAPSFFNALKYSLHDHMFNYLCLVIGDDA-VLKNIVKIQKYTLIMLCTVK 461
           +F +   +N   P+    +   + ++ F YL + +GD   V K +++ +KY  +  C +K
Sbjct: 103 IFCIKGFKNTLLPTVKRQVVNEIFENDFGYLYMYLGDQVDVEKTVLQKRKYLQVKECRMK 162


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,259,278
Number of Sequences: 28952
Number of extensions: 183162
Number of successful extensions: 295
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 295
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)