Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0504
         (722 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr 3|||M...    28   1.2  
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    27   3.6  
SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|ch...    26   6.3  
SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces...    25   8.3  

>SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 535

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 199 YTLQWYSCYSTTFYTL*IVLY 137
           +T  WY C +T F+T  I+LY
Sbjct: 34  WTAPWYYCLTTLFFTWLIILY 54


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +1

Query: 496  FKNEHRNLLL-DWKKLYKHHFFVVLGFTLLNTKSFVTRKV*FMIS 627
            F+  H+N L   W+   +  F+  LGF + N+  +  R + F  S
Sbjct: 982  FRENHKNSLRKSWEAFKRRAFWTSLGFAINNSLLYFVRALLFYCS 1026


>SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 684

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -3

Query: 159 IRYELYYIVFLKKVGMNLVLLNTDKCNGTMNLNSN 55
           +RY   YIV+   V  +++LL  D C  +  L  N
Sbjct: 534 LRYSTLYIVYAAIVSCSVILLLRDMCTDSELLTLN 568


>SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 490

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 238 GFVNLRNCLHN*YYHLQVCNKYFLHS 315
           GF+  RN L    YH ++C K+F  S
Sbjct: 398 GFIE-RNELEQLSYHFRICEKFFKES 422


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,713,565
Number of Sequences: 5004
Number of extensions: 53926
Number of successful extensions: 101
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)