Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0504
         (722 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56945| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_42101| Best HMM Match : Tryp_alpha_amyl (HMM E-Value=3.6)           28   8.8  
SB_36759| Best HMM Match : Tryp_alpha_amyl (HMM E-Value=3.6)           28   8.8  

>SB_56945| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 168

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 16/59 (27%), Positives = 33/59 (55%)
 Frame = +1

Query: 496 FKNEHRNLLLDWKKLYKHHFFVVLGFTLLNTKSFVTRKV*FMISKTTLVNIKVTVNLSM 672
           F+ EH + L   KK++   F +++  T++ T + +T  V   ++ T  V + VTV +++
Sbjct: 27  FEREHGDSLPIHKKVWSFFFIIIIFITIIITIT-ITVTVTVTVTVTVTVTVTVTVTVTV 84


>SB_42101| Best HMM Match : Tryp_alpha_amyl (HMM E-Value=3.6)
          Length = 307

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -3

Query: 216 HCCAKSIPYNGTAVIVLRFIRYELYYIVFLKKVGMNLVLL 97
           HC A S+ Y G+ V+  R+I   LY  + + ++    VLL
Sbjct: 202 HCIAVSL-YRGSIVLPYRYIEVPLYCRIVISRIHCIAVLL 240


>SB_36759| Best HMM Match : Tryp_alpha_amyl (HMM E-Value=3.6)
          Length = 357

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -3

Query: 216 HCCAKSIPYNGTAVIVLRFIRYELYYIVFLKKVGMNLVLL 97
           HC A S+ Y G+ V+  R+I   LY  + + ++    VLL
Sbjct: 206 HCIAVSL-YRGSIVLPYRYIEVPLYCRIVISRIHCIAVLL 244


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,543,311
Number of Sequences: 59808
Number of extensions: 344540
Number of successful extensions: 504
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 504
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)