Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0503
         (725 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|...    27   2.1  
SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor Raf2|S...    25   8.3  
SPAC1A6.09c |lag1||sphingosine N-acyltransferase Lag1|Schizosacc...    25   8.3  

>SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 456

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = +1

Query: 103 KNSFAQLSLYNSTESETIANTTTKKDEDGPSDDTSMIEVPPNTAGCQEQGTIWI 264
           +N+F  + +    ES + AN++ +   D  S      E PP+T+     G +WI
Sbjct: 285 RNAFFNIPIAEIMESVS-ANSSRRNSHDSNSTIICEPEYPPDTSFNSSPGRLWI 337


>SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor
           Raf2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 443 KLFAEIKHYIALRTNTRQRYSQ 378
           KLF +IKH I  R++ +Q  SQ
Sbjct: 352 KLFNDIKHAIGFRSSVQQARSQ 373


>SPAC1A6.09c |lag1||sphingosine N-acyltransferase
           Lag1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 12/32 (37%), Positives = 14/32 (43%)
 Frame = +3

Query: 3   CAQCGLKFIYLCFWSTYFDPGYSSNIWQSRPR 98
           C Q    F YLCFW        SSN W +  +
Sbjct: 156 CEQGYSFFYYLCFWFLGLYIYRSSNYWSNEEK 187


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,085,612
Number of Sequences: 5004
Number of extensions: 67211
Number of successful extensions: 183
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)