Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0503
         (725 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0719 + 26612152-26612856,26613102-26613110,26614272-26615198     31   0.93 
03_01_0177 + 1424773-1424850,1425307-1425391,1425498-1425577,142...    29   3.8  
01_01_0977 - 7717808-7717837,7718227-7718327,7718449-7718548,771...    29   3.8  
05_04_0411 + 21057838-21058878,21059723-21059926,21060011-21060238     28   6.6  
07_03_1670 - 28505732-28506426,28508202-28509309                       28   8.7  
03_05_0530 - 25306788-25306919,25307446-25308037,25308152-253089...    28   8.7  

>11_06_0719 + 26612152-26612856,26613102-26613110,26614272-26615198
          Length = 546

 Score = 31.1 bits (67), Expect = 0.93
 Identities = 27/106 (25%), Positives = 42/106 (39%), Gaps = 5/106 (4%)
 Frame = +1

Query: 25  LFICVSGAPISIQDILQIFGNPVRDFKNSFAQLSLYNSTESETIANTTTKKDEDGPS--- 195
           LF+C     I    +      PVR    S ++LS   S    T+   T  +D DG +   
Sbjct: 342 LFVCNHRTLIDPVYVSVALDRPVRAVSYSLSRLSELISPIGRTV-RLTRDRDSDGRAMAR 400

Query: 196 --DDTSMIEVPPNTAGCQEQGTIWIKVVFADDHGDICNIGINTGVA 327
             D   ++ V P    C+E   +    +FA+   D+  +GI    A
Sbjct: 401 LLDGGDLVVVCPEGTTCREPCLLRFSPLFAELSDDVVPVGIAVDTA 446


>03_01_0177 +
           1424773-1424850,1425307-1425391,1425498-1425577,
           1425771-1425898,1425962-1426049,1426187-1426277,
           1426712-1426881,1427151-1427438,1427527-1427643,
           1427924-1427976,1428029-1428090,1429042-1429118,
           1429269-1429322,1429417-1429476,1429581-1429658,
           1429805-1429851,1429933-1430051,1430280-1430364,
           1430443-1430557,1430662-1430784,1430869-1430969,
           1431346-1431475
          Length = 742

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 14/54 (25%), Positives = 27/54 (50%)
 Frame = +1

Query: 70  LQIFGNPVRDFKNSFAQLSLYNSTESETIANTTTKKDEDGPSDDTSMIEVPPNT 231
           +++ G+  +  K SF      NST+S  ++      DE+  ++D  +I+   NT
Sbjct: 257 IKVAGHRWKGNKTSFGDSDEENSTQSNELSELEEDGDEEESANDNELIDANVNT 310


>01_01_0977 -
           7717808-7717837,7718227-7718327,7718449-7718548,
           7718706-7718822,7718913-7718990,7719980-7720058,
           7720184-7720249,7720373-7720441,7720890-7721188
          Length = 312

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
 Frame = -3

Query: 315 VYAYVAYITMVVCKHHFYPNSALLLASRCVRRYFNHA-SVIRRTVFI--LFGSGICYCFA 145
           VYAY++ I ++VC     P + ++   + ++  FN A + +  T F+  LF  G+ Y   
Sbjct: 179 VYAYISIIALIVC----IPPAVIIEGPQLLQHGFNDAIAKVGLTKFVSDLFFVGLFY-HL 233

Query: 144 FGAIIQRKLGERVFKISDGIAKYLKNI 64
           +  +    L ERV  ++  +   LK +
Sbjct: 234 YNQVATNTL-ERVAPLTHAVGNVLKRV 259


>05_04_0411 + 21057838-21058878,21059723-21059926,21060011-21060238
          Length = 490

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +1

Query: 118 QLSLYNSTESETIANTTTKKDEDGPSDDTSMIEVPPN 228
           ++SL  ST S  +  TTT      P+ D +    PPN
Sbjct: 66  RISLSTSTPSPPVTTTTTTTSAPNPNPDPNPTLTPPN 102


>07_03_1670 - 28505732-28506426,28508202-28509309
          Length = 600

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +1

Query: 52  ISIQDILQIFGNPVRDFKNSFAQLSLYNSTESETIANTTT 171
           +++ D L++FG+ +     + A+LS  NST  E+ A   T
Sbjct: 134 LALSDCLELFGHTLDLLGTAAAELSAGNSTAEESAAGVQT 173


>03_05_0530 -
           25306788-25306919,25307446-25308037,25308152-25308975,
           25309533-25309592,25310115-25310180,25310318-25310461,
           25310616-25310756,25310898-25311056,25311818-25311884,
           25311986-25312158,25312237-25312333,25312410-25312528,
           25312867-25312951,25313120-25313321,25314456-25314633
          Length = 1012

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
 Frame = +3

Query: 279 RRPW*YMQHRHKHRRGV--VCSAHYIKM---DAKFVILLTITLASVSSQGNVVFNFREK 440
           R+PW ++QH H + RGV  V + H +++   D K+ ++   T+     + N +    EK
Sbjct: 746 RQPWPWIQHGHAYWRGVLYVNTCHVMRISLSDGKYQVIKHPTVYYKKFKPNFLIGKSEK 804


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,384,924
Number of Sequences: 37544
Number of extensions: 418788
Number of successful extensions: 993
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 971
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 993
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)