BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0503 (725 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_45335| Best HMM Match : Runt (HMM E-Value=0) 31 1.3 SB_52991| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9 SB_18911| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8 SB_49202| Best HMM Match : Herpes_UL1 (HMM E-Value=3.2) 29 5.1 SB_42662| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7 SB_12742| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7 SB_22885| Best HMM Match : Apc13p (HMM E-Value=5.6) 28 8.9 SB_17243| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9 >SB_45335| Best HMM Match : Runt (HMM E-Value=0) Length = 496 Score = 30.7 bits (66), Expect = 1.3 Identities = 14/34 (41%), Positives = 19/34 (55%) Frame = +2 Query: 89 PSEILKTLSPNFLCIIAPKAKQ*QIPLPKRMKTV 190 P E++KT SPNF+C + P + LP K V Sbjct: 26 PGELVKTDSPNFVCSVLPSHWRCNKTLPVAFKVV 59 >SB_52991| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 820 Score = 29.5 bits (63), Expect = 2.9 Identities = 13/36 (36%), Positives = 18/36 (50%) Frame = -1 Query: 302 LHISPWSSANTTFIQIVPCSWHPAVFGGTSIMLVSS 195 L++S + TF+ CSW P GG +I V S Sbjct: 409 LNLSKCKEMSVTFLNYDSCSWQPMAAGGNTIDRVHS 444 >SB_18911| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 146 Score = 29.1 bits (62), Expect = 3.8 Identities = 14/38 (36%), Positives = 21/38 (55%) Frame = +3 Query: 303 HRHKHRRGVVCSAHYIKMDAKFVILLTITLASVSSQGN 416 H H HRR C HYI + V+++T T+ + SS + Sbjct: 25 HNHHHRRHYHCH-HYIIIIIIIVVVITTTIITSSSSSS 61 >SB_49202| Best HMM Match : Herpes_UL1 (HMM E-Value=3.2) Length = 304 Score = 28.7 bits (61), Expect = 5.1 Identities = 12/28 (42%), Positives = 21/28 (75%) Frame = -1 Query: 335 ADYATPVFMPMLHISPWSSANTTFIQIV 252 ADY+ F P++HI+P S + +++IQ+V Sbjct: 133 ADYSN--FKPIVHIAPVSQSESSYIQLV 158 >SB_42662| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1054 Score = 28.3 bits (60), Expect = 6.7 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%) Frame = +1 Query: 199 DTSMIEVPPNTAGCQEQG-TIWIKVVFADDHGDICNIG 309 D + + P N+ G G ++WIK F HG I +G Sbjct: 153 DANADDAPKNSGGGGGSGGSVWIKTAFLRGHGTISALG 190 >SB_12742| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1077 Score = 28.3 bits (60), Expect = 6.7 Identities = 13/32 (40%), Positives = 17/32 (53%) Frame = +1 Query: 145 SETIANTTTKKDEDGPSDDTSMIEVPPNTAGC 240 S+T + DED SDD+ I +PP GC Sbjct: 252 SKTAHTVAFQLDEDPFSDDSGSIIIPPPPPGC 283 >SB_22885| Best HMM Match : Apc13p (HMM E-Value=5.6) Length = 381 Score = 27.9 bits (59), Expect = 8.9 Identities = 12/41 (29%), Positives = 23/41 (56%) Frame = +1 Query: 79 FGNPVRDFKNSFAQLSLYNSTESETIANTTTKKDEDGPSDD 201 F VRD ++ +S+ +S + + + + ++K DG SDD Sbjct: 68 FEKAVRDDEDKTPDISITSSEDEQAVESFHSEKPADGDSDD 108 >SB_17243| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 778 Score = 27.9 bits (59), Expect = 8.9 Identities = 15/48 (31%), Positives = 23/48 (47%) Frame = +1 Query: 223 PNTAGCQEQGTIWIKVVFADDHGDICNIGINTGVA*SAQHITLKWTRN 366 P G GT W K F+ +G + I I+TG + +T++ RN Sbjct: 425 PTNCGASFDGT-WQKRGFSSLNGCVTGISIDTGKVLDVEALTMRIARN 471 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 22,952,910 Number of Sequences: 59808 Number of extensions: 514656 Number of successful extensions: 1222 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 1129 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1222 length of database: 16,821,457 effective HSP length: 80 effective length of database: 12,036,817 effective search space used: 1937927537 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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