Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0503
         (725 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45335| Best HMM Match : Runt (HMM E-Value=0)                        31   1.3  
SB_52991| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_18911| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_49202| Best HMM Match : Herpes_UL1 (HMM E-Value=3.2)                29   5.1  
SB_42662| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_12742| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_22885| Best HMM Match : Apc13p (HMM E-Value=5.6)                    28   8.9  
SB_17243| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  

>SB_45335| Best HMM Match : Runt (HMM E-Value=0)
          Length = 496

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +2

Query: 89  PSEILKTLSPNFLCIIAPKAKQ*QIPLPKRMKTV 190
           P E++KT SPNF+C + P   +    LP   K V
Sbjct: 26  PGELVKTDSPNFVCSVLPSHWRCNKTLPVAFKVV 59


>SB_52991| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 820

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -1

Query: 302 LHISPWSSANTTFIQIVPCSWHPAVFGGTSIMLVSS 195
           L++S     + TF+    CSW P   GG +I  V S
Sbjct: 409 LNLSKCKEMSVTFLNYDSCSWQPMAAGGNTIDRVHS 444


>SB_18911| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 146

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +3

Query: 303 HRHKHRRGVVCSAHYIKMDAKFVILLTITLASVSSQGN 416
           H H HRR   C  HYI +    V+++T T+ + SS  +
Sbjct: 25  HNHHHRRHYHCH-HYIIIIIIIVVVITTTIITSSSSSS 61


>SB_49202| Best HMM Match : Herpes_UL1 (HMM E-Value=3.2)
          Length = 304

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 12/28 (42%), Positives = 21/28 (75%)
 Frame = -1

Query: 335 ADYATPVFMPMLHISPWSSANTTFIQIV 252
           ADY+   F P++HI+P S + +++IQ+V
Sbjct: 133 ADYSN--FKPIVHIAPVSQSESSYIQLV 158


>SB_42662| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1054

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +1

Query: 199 DTSMIEVPPNTAGCQEQG-TIWIKVVFADDHGDICNIG 309
           D +  + P N+ G    G ++WIK  F   HG I  +G
Sbjct: 153 DANADDAPKNSGGGGGSGGSVWIKTAFLRGHGTISALG 190


>SB_12742| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1077

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 145 SETIANTTTKKDEDGPSDDTSMIEVPPNTAGC 240
           S+T      + DED  SDD+  I +PP   GC
Sbjct: 252 SKTAHTVAFQLDEDPFSDDSGSIIIPPPPPGC 283


>SB_22885| Best HMM Match : Apc13p (HMM E-Value=5.6)
          Length = 381

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +1

Query: 79  FGNPVRDFKNSFAQLSLYNSTESETIANTTTKKDEDGPSDD 201
           F   VRD ++    +S+ +S + + + +  ++K  DG SDD
Sbjct: 68  FEKAVRDDEDKTPDISITSSEDEQAVESFHSEKPADGDSDD 108


>SB_17243| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 778

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +1

Query: 223 PNTAGCQEQGTIWIKVVFADDHGDICNIGINTGVA*SAQHITLKWTRN 366
           P   G    GT W K  F+  +G +  I I+TG     + +T++  RN
Sbjct: 425 PTNCGASFDGT-WQKRGFSSLNGCVTGISIDTGKVLDVEALTMRIARN 471


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,952,910
Number of Sequences: 59808
Number of extensions: 514656
Number of successful extensions: 1222
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1222
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)