Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0503
         (725 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81465-4|CAB03866.3|  613|Caenorhabditis elegans Hypothetical pr...    31   0.84 
AL032646-13|CAA21687.3|  613|Caenorhabditis elegans Hypothetical...    31   0.84 
Z95619-4|CAB09113.2|  397|Caenorhabditis elegans Hypothetical pr...    28   5.9  
AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical ...    28   7.8  

>Z81465-4|CAB03866.3|  613|Caenorhabditis elegans Hypothetical
           protein Y54E2A.1 protein.
          Length = 613

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 18/61 (29%), Positives = 28/61 (45%)
 Frame = +3

Query: 294 YMQHRHKHRRGVVCSAHYIKMDAKFVILLTITLASVSSQGNVVFNFREKLWFATSTTTEK 473
           YM H     R    S HYI+    F  +LT+T+ S      + +  R  +WF++    +K
Sbjct: 133 YMSHTWSMGRFACYSVHYIQQFTCFCSVLTMTMISFERFLAIAYPMR-NIWFSSIGRAKK 191

Query: 474 V 476
           V
Sbjct: 192 V 192


>AL032646-13|CAA21687.3|  613|Caenorhabditis elegans Hypothetical
           protein Y54E2A.1 protein.
          Length = 613

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 18/61 (29%), Positives = 28/61 (45%)
 Frame = +3

Query: 294 YMQHRHKHRRGVVCSAHYIKMDAKFVILLTITLASVSSQGNVVFNFREKLWFATSTTTEK 473
           YM H     R    S HYI+    F  +LT+T+ S      + +  R  +WF++    +K
Sbjct: 133 YMSHTWSMGRFACYSVHYIQQFTCFCSVLTMTMISFERFLAIAYPMR-NIWFSSIGRAKK 191

Query: 474 V 476
           V
Sbjct: 192 V 192


>Z95619-4|CAB09113.2|  397|Caenorhabditis elegans Hypothetical
           protein H21P03.2 protein.
          Length = 397

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = +1

Query: 115 AQLSLYNSTESETIANTTTKKDEDGPSDDTSMIE--VPPNTAGC 240
           ++L+L++    E +  +++KKD+DGP      I+  V P   GC
Sbjct: 190 SRLALFHRLTPELVFASSSKKDDDGPPHYKKFIQPAVYPFNIGC 233


>AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical
           protein Y8A9A.2 protein.
          Length = 1360

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 1/63 (1%)
 Frame = +1

Query: 133 NSTESETIANTTTKKDEDGPSDDTSMIEVPPNTAGCQEQGTIWIKVVFADDHGDIC-NIG 309
           NS  ++T+   +     +   D+T  +     T  C   G +W +    D   D C N G
Sbjct: 771 NSLTAQTVDGVSICGPVEAAEDETDPVPCTTTTPACCVLGGVWSEWSSGDACNDTCGNCG 830

Query: 310 INT 318
           + T
Sbjct: 831 VTT 833


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,134,819
Number of Sequences: 27780
Number of extensions: 382227
Number of successful extensions: 1109
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 958
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1109
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)