BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0503 (725 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z81465-4|CAB03866.3| 613|Caenorhabditis elegans Hypothetical pr... 31 0.84 AL032646-13|CAA21687.3| 613|Caenorhabditis elegans Hypothetical... 31 0.84 Z95619-4|CAB09113.2| 397|Caenorhabditis elegans Hypothetical pr... 28 5.9 AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical ... 28 7.8 >Z81465-4|CAB03866.3| 613|Caenorhabditis elegans Hypothetical protein Y54E2A.1 protein. Length = 613 Score = 31.1 bits (67), Expect = 0.84 Identities = 18/61 (29%), Positives = 28/61 (45%) Frame = +3 Query: 294 YMQHRHKHRRGVVCSAHYIKMDAKFVILLTITLASVSSQGNVVFNFREKLWFATSTTTEK 473 YM H R S HYI+ F +LT+T+ S + + R +WF++ +K Sbjct: 133 YMSHTWSMGRFACYSVHYIQQFTCFCSVLTMTMISFERFLAIAYPMR-NIWFSSIGRAKK 191 Query: 474 V 476 V Sbjct: 192 V 192 >AL032646-13|CAA21687.3| 613|Caenorhabditis elegans Hypothetical protein Y54E2A.1 protein. Length = 613 Score = 31.1 bits (67), Expect = 0.84 Identities = 18/61 (29%), Positives = 28/61 (45%) Frame = +3 Query: 294 YMQHRHKHRRGVVCSAHYIKMDAKFVILLTITLASVSSQGNVVFNFREKLWFATSTTTEK 473 YM H R S HYI+ F +LT+T+ S + + R +WF++ +K Sbjct: 133 YMSHTWSMGRFACYSVHYIQQFTCFCSVLTMTMISFERFLAIAYPMR-NIWFSSIGRAKK 191 Query: 474 V 476 V Sbjct: 192 V 192 >Z95619-4|CAB09113.2| 397|Caenorhabditis elegans Hypothetical protein H21P03.2 protein. Length = 397 Score = 28.3 bits (60), Expect = 5.9 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 2/44 (4%) Frame = +1 Query: 115 AQLSLYNSTESETIANTTTKKDEDGPSDDTSMIE--VPPNTAGC 240 ++L+L++ E + +++KKD+DGP I+ V P GC Sbjct: 190 SRLALFHRLTPELVFASSSKKDDDGPPHYKKFIQPAVYPFNIGC 233 >AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical protein Y8A9A.2 protein. Length = 1360 Score = 27.9 bits (59), Expect = 7.8 Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 1/63 (1%) Frame = +1 Query: 133 NSTESETIANTTTKKDEDGPSDDTSMIEVPPNTAGCQEQGTIWIKVVFADDHGDIC-NIG 309 NS ++T+ + + D+T + T C G +W + D D C N G Sbjct: 771 NSLTAQTVDGVSICGPVEAAEDETDPVPCTTTTPACCVLGGVWSEWSSGDACNDTCGNCG 830 Query: 310 INT 318 + T Sbjct: 831 VTT 833 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 17,134,819 Number of Sequences: 27780 Number of extensions: 382227 Number of successful extensions: 1109 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 958 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1109 length of database: 12,740,198 effective HSP length: 79 effective length of database: 10,545,578 effective search space used: 1708383636 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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