Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0503
(725 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ325087-1|ABD14101.1| 179|Apis mellifera complementary sex det... 24 1.7
DQ325086-1|ABD14100.1| 179|Apis mellifera complementary sex det... 24 1.7
DQ325085-1|ABD14099.1| 179|Apis mellifera complementary sex det... 24 1.7
DQ325084-1|ABD14098.1| 179|Apis mellifera complementary sex det... 24 1.7
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase... 23 3.9
DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chlor... 22 5.1
DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chlor... 22 5.1
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 22 5.1
AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter... 22 5.1
AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter... 22 5.1
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 22 5.1
AY739658-1|AAU85297.1| 664|Apis mellifera hyperpolarization-act... 22 6.8
AY280848-1|AAQ16312.1| 632|Apis mellifera hyperpolarization-act... 22 6.8
>DQ325087-1|ABD14101.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 23.8 bits (49), Expect = 1.7
Identities = 8/38 (21%), Positives = 21/38 (55%)
Frame = -1
Query: 458 RSCKPKLFAEIKHYIALRTNTRQRYSQ*NHKFRVHFNV 345
RS +PK+ + + + N + Y+ N+ ++++N+
Sbjct: 75 RSREPKIISSLSNNTIHNNNYKYNYNNNNYNKKLYYNI 112
>DQ325086-1|ABD14100.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 23.8 bits (49), Expect = 1.7
Identities = 8/38 (21%), Positives = 21/38 (55%)
Frame = -1
Query: 458 RSCKPKLFAEIKHYIALRTNTRQRYSQ*NHKFRVHFNV 345
RS +PK+ + + + N + Y+ N+ ++++N+
Sbjct: 75 RSREPKIISSLSNNTIHNNNYKYNYNNNNYNKKLYYNI 112
>DQ325085-1|ABD14099.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 23.8 bits (49), Expect = 1.7
Identities = 8/38 (21%), Positives = 21/38 (55%)
Frame = -1
Query: 458 RSCKPKLFAEIKHYIALRTNTRQRYSQ*NHKFRVHFNV 345
RS +PK+ + + + N + Y+ N+ ++++N+
Sbjct: 75 RSREPKIISSLSNNTIHNNNYKYNYNNNNYNKKLYYNI 112
>DQ325084-1|ABD14098.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 23.8 bits (49), Expect = 1.7
Identities = 8/38 (21%), Positives = 21/38 (55%)
Frame = -1
Query: 458 RSCKPKLFAEIKHYIALRTNTRQRYSQ*NHKFRVHFNV 345
RS +PK+ + + + N + Y+ N+ ++++N+
Sbjct: 75 RSREPKIISSLSNNTIHNNNYKYNYNNNNYNKKLYYNI 112
>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
protein.
Length = 1143
Score = 22.6 bits (46), Expect = 3.9
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Frame = -3
Query: 216 FNHASVIRRTVFILFGSGICYCFAFGAIIQRKL----GERVFKISDG 88
F S +R VF L S AFG + L GER+ K++ G
Sbjct: 598 FGPLSNVRFAVFALGSSAYPNFCAFGRYVDNLLGELGGERLLKLAQG 644
>DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 22.2 bits (45), Expect = 5.1
Identities = 6/14 (42%), Positives = 11/14 (78%)
Frame = -3
Query: 168 SGICYCFAFGAIIQ 127
+G+C F FGA+++
Sbjct: 308 TGVCLTFVFGALLE 321
>DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 22.2 bits (45), Expect = 5.1
Identities = 6/14 (42%), Positives = 11/14 (78%)
Frame = -3
Query: 168 SGICYCFAFGAIIQ 127
+G+C F FGA+++
Sbjct: 308 TGVCLTFVFGALLE 321
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 22.2 bits (45), Expect = 5.1
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = -1
Query: 242 WHPAVFGGTSIMLVSSE 192
W PA +GG + + V SE
Sbjct: 84 WDPAEYGGVTELYVPSE 100
>AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 593
Score = 22.2 bits (45), Expect = 5.1
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = -1
Query: 128 KESWAKEFLKSRTGLPNI*RISW 60
KE W + L+ G+ NI I W
Sbjct: 185 KEFWERRTLQISDGIENIGSIRW 207
>AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 646
Score = 22.2 bits (45), Expect = 5.1
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = -1
Query: 128 KESWAKEFLKSRTGLPNI*RISW 60
KE W + L+ G+ NI I W
Sbjct: 238 KEFWERRTLQISDGIENIGSIRW 260
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 22.2 bits (45), Expect = 5.1
Identities = 7/17 (41%), Positives = 11/17 (64%)
Frame = -1
Query: 242 WHPAVFGGTSIMLVSSE 192
W+P +GG ++ V SE
Sbjct: 97 WNPEEYGGVEMLYVPSE 113
>AY739658-1|AAU85297.1| 664|Apis mellifera
hyperpolarization-activated ion channelvariant L
protein.
Length = 664
Score = 21.8 bits (44), Expect = 6.8
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = -1
Query: 542 LMHHVFVPGDTQLRNPYNLSSLYFFGSG 459
L + VF PGD ++ S +YF G
Sbjct: 472 LRYEVFQPGDIIIKEGTIGSKMYFIQEG 499
>AY280848-1|AAQ16312.1| 632|Apis mellifera
hyperpolarization-activated ion channel protein.
Length = 632
Score = 21.8 bits (44), Expect = 6.8
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = -1
Query: 542 LMHHVFVPGDTQLRNPYNLSSLYFFGSG 459
L + VF PGD ++ S +YF G
Sbjct: 440 LRYEVFQPGDIIIKEGTIGSKMYFIQEG 467
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,849
Number of Sequences: 438
Number of extensions: 4758
Number of successful extensions: 21
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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