Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0501
(720 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr 3|||Ma... 29 0.67
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar... 28 1.2
SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomy... 28 1.2
SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit Dpb3|Schizosa... 27 2.0
SPAC637.11 |suv3||ATP-dependent RNA helicase Suv3|Schizosaccharo... 27 2.7
SPBC32F12.05c |cwf12||complexed with Cdc5 protein Cwf12 |Schizos... 26 4.7
SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|... 26 6.2
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 25 8.2
SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyce... 25 8.2
>SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 176
Score = 29.1 bits (62), Expect = 0.67
Identities = 17/62 (27%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Frame = +2
Query: 278 ELVQLMKWKQARGKFYPQLSYLIKVNTPRAV----MQETKKAFRKLPNIESAMTALSNLK 445
E++++++ GK Y Q+ ++V T + V ++E K+AF + E+ +L NL+
Sbjct: 74 EVLKILRDFDKTGKGYLQMEDFVRVMTEKIVERDPLEEIKRAFELFDDDETGKISLRNLR 133
Query: 446 GV 451
V
Sbjct: 134 RV 135
>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 682
Score = 28.3 bits (60), Expect = 1.2
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = -3
Query: 361 WRVHFYQIRQLRVEFSSGLFPFHELDKFFVDHV 263
WR+ Y I QL F SGL H D FF D +
Sbjct: 401 WRMRRYLIIQLIRVFLSGLSTVHFQDFFFADQM 433
>SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 314
Score = 28.3 bits (60), Expect = 1.2
Identities = 33/117 (28%), Positives = 49/117 (41%), Gaps = 3/117 (2%)
Frame = +1
Query: 286 PAHEMETGQRKILPAVVVSDKSEHATSCDARDEKGLPQTAQYRIRDDRSKQSQRRGNGHS 465
P + + QR I V+ D +H +C A + T +D S +RR GH
Sbjct: 207 PVVKFQAHQRYITRCVLSPDV-KHLATCSADATVNIWST------EDMSFMLERRLQGHQ 259
Query: 466 ISVISCR*SRNSTVL---ADECVQAIPEMEGSDYTAREYLNFVSHIRNVCDRLNEEQ 627
V C S +ST L + + V + E+ + T R+Y H VC LN+ Q
Sbjct: 260 RWVWDCAFSADSTYLVTASSDHVARLWELSSGE-TIRQYSG--HHKAAVCVALNDYQ 313
>SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit
Dpb3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 199
Score = 27.5 bits (58), Expect = 2.0
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 3/30 (10%)
Frame = +3
Query: 108 NAKEFD---SVLKLYPQAIKLKAERKTKRP 188
+ ++FD +++ P A +KAERKTKRP
Sbjct: 88 SVEQFDFLQDIVEKVPDAPPIKAERKTKRP 117
>SPAC637.11 |suv3||ATP-dependent RNA helicase
Suv3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 27.1 bits (57), Expect = 2.7
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
Frame = +3
Query: 63 TMATAKDTSTFFLEANAKEFDSVLKLYPQAIKLKAERKTKRPD---ELIKLDN---WY 218
++A +K +STF L+ K D +L Y + ++ + + RPD +L L N WY
Sbjct: 107 SLALSKSSSTFDLQKIKKIHDCLLSEYRKYVRYQERIEETRPDLQKQLTDLKNPIEWY 164
>SPBC32F12.05c |cwf12||complexed with Cdc5 protein Cwf12
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 217
Score = 26.2 bits (55), Expect = 4.7
Identities = 13/51 (25%), Positives = 23/51 (45%)
Frame = +3
Query: 81 DTSTFFLEANAKEFDSVLKLYPQAIKLKAERKTKRPDELIKLDNWYQNELP 233
D + A+E V +L+ + ER+ K+ + +LD WY +P
Sbjct: 103 DIDDYRYYGRARELPGVKELFEADMSFIPERQRKQEMQKRRLDAWYFGYIP 153
>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 612
Score = 25.8 bits (54), Expect = 6.2
Identities = 8/25 (32%), Positives = 14/25 (56%)
Frame = -2
Query: 113 CICLQKESRRVFRGSHCERSKCTTL 39
C+C+ K + +F G H +C +L
Sbjct: 344 CVCVPKATHHIFSGGHDGTIRCWSL 368
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1428
Score = 25.4 bits (53), Expect = 8.2
Identities = 18/71 (25%), Positives = 30/71 (42%)
Frame = +1
Query: 391 LPQTAQYRIRDDRSKQSQRRGNGHSISVISCR*SRNSTVLADECVQAIPEMEGSDYTARE 570
+P+ A++ I D R+ ISV+ R ++N T A C+ E Y+ +
Sbjct: 72 VPRRARFEINDPRNPTFSMMALQDIISVLEYRRNKNPTSTAHICIDK-KGKEAVSYSWDK 130
Query: 571 YLNFVSHIRNV 603
LN +V
Sbjct: 131 ILNRAKQFASV 141
>SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 520
Score = 25.4 bits (53), Expect = 8.2
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +1
Query: 652 PHMVELALWTHNIVSDLQPQ 711
PH +L LW +N+V + P+
Sbjct: 436 PHAGDLGLWFYNVVDGILPE 455
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,094,414
Number of Sequences: 5004
Number of extensions: 64856
Number of successful extensions: 162
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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