Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0501
         (720 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38771| Best HMM Match : No HMM Matches (HMM E-Value=.)              62   4e-10
SB_50254| Best HMM Match : Vicilin_N (HMM E-Value=1.7)                 29   3.8  
SB_56680| Best HMM Match : PTR2 (HMM E-Value=3e-06)                    29   5.0  
SB_10690| Best HMM Match : Pkinase (HMM E-Value=6.4e-08)               28   6.6  
SB_24373| Best HMM Match : Skb1 (HMM E-Value=1.6e-05)                  28   6.6  
SB_2557| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.8  

>SB_38771| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 267

 Score = 62.1 bits (144), Expect = 4e-10
 Identities = 30/66 (45%), Positives = 43/66 (65%)
 Frame = +2

Query: 257 DAHMIHEELVQLMKWKQARGKFYPQLSYLIKVNTPRAVMQETKKAFRKLPNIESAMTALS 436
           + ++  +EL +LM WK +RGKF P+L  LIK N+   +   TKKAF+ LP++  A+  LS
Sbjct: 58  EKYLTKDELTKLMTWKLSRGKFRPRLVDLIKSNSDDKIDTLTKKAFKLLPDVIQAIKVLS 117

Query: 437 NLKGVG 454
            L GVG
Sbjct: 118 ELNGVG 123



 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 23/52 (44%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
 Frame = +3

Query: 99  LEANAKEFDSVLKLYPQAIKLKAERKTK-RPDELIKLDNWYQNELPKXIKSR 251
           L+A+A  +  VL LY   +K  A+ K K + ++L++LDNW+Q ELP  I SR
Sbjct: 5   LDASAVRWHEVLDLYGVVVKEMAKGKKKDKAEQLLELDNWFQQELPVSISSR 56



 Score = 34.3 bits (75), Expect = 0.10
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = +1

Query: 643 KWFPHMVELALWTHNIVSDLQPQLL 717
           KW  H VELALWT+ + S   P LL
Sbjct: 133 KWDEHKVELALWTYTVASKHAPHLL 157


>SB_50254| Best HMM Match : Vicilin_N (HMM E-Value=1.7)
          Length = 300

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 5/96 (5%)
 Frame = +1

Query: 256 RCA--HDPRRTCPAHEM---ETGQRKILPAVVVSDKSEHATSCDARDEKGLPQTAQYRIR 420
           RCA  +DPRR     +    E  + K+    +V+D+     SCD +++KG     + +  
Sbjct: 63  RCARMNDPRRIQAGQQSSYKEDKKPKVEHRSLVTDRRTRR-SCDQQEDKGSLSNQKQQKL 121

Query: 421 DDRSKQSQRRGNGHSISVISCR*SRNSTVLADECVQ 528
            ++SKQ++   N    S   C  S +   L +E +Q
Sbjct: 122 GNQSKQAENLNNQKQTS--ECDQSEHKNHLTNEKLQ 155


>SB_56680| Best HMM Match : PTR2 (HMM E-Value=3e-06)
          Length = 606

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 23/65 (35%), Positives = 31/65 (47%)
 Frame = -1

Query: 453 PTPLRLLRAVIADSILGSLRKAFFVSCITARGVFTFIRYDNCG*NFPLACFHFMSWTSSS 274
           P  LR+ R  IA  IL  + + F    IT   V  F+  DN G +   A    + +TS +
Sbjct: 48  PRKLRMRRLPIACLILAEVCERFAYYGITINFVL-FL--DNFGWSMFAAAGGVLVYTSVA 104

Query: 273 WIMCA 259
           W MCA
Sbjct: 105 WFMCA 109


>SB_10690| Best HMM Match : Pkinase (HMM E-Value=6.4e-08)
          Length = 865

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +1

Query: 340 SDKSEHATSCDARDEKGLPQTAQYRIRDDRSKQSQRRGNGH 462
           S K EH +   +RD+K  P++   R R  R  +SQ RG  +
Sbjct: 150 SRKREHRSRSKSRDKKPKPESPS-RGRSSRRSRSQERGTSN 189


>SB_24373| Best HMM Match : Skb1 (HMM E-Value=1.6e-05)
          Length = 494

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +3

Query: 150 AIKLKAERKTKRPDELIKLDNWYQ 221
           ++K K ER   R D+LIKL  WY+
Sbjct: 426 SLKRKLERVRDREDKLIKLKLWYE 449


>SB_2557| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 627

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +3

Query: 168 ERKTKRPDELIKLDNWYQNELPKXIKSRGKMR 263
           ER  K  DELI L   YQ E+ K  K   ++R
Sbjct: 34  ERLEKSQDELIDLQQRYQREIEKLEKDNRELR 65


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,640,490
Number of Sequences: 59808
Number of extensions: 508810
Number of successful extensions: 1234
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1234
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)