Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0501
         (720 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88178-4|AAC24411.1|  460|Caenorhabditis elegans Hypothetical pr...    30   1.4  
U00036-12|AAK29854.2|  237|Caenorhabditis elegans Hypothetical p...    29   3.3  
AF143152-1|AAD37863.1|  237|Caenorhabditis elegans putative NADH...    29   3.3  
AF099003-3|ABA00149.1|  759|Caenorhabditis elegans Hypothetical ...    29   4.4  
AF003386-14|AAK82896.1|  811|Caenorhabditis elegans Hypothetical...    28   7.7  

>U88178-4|AAC24411.1|  460|Caenorhabditis elegans Hypothetical
           protein W09C3.2 protein.
          Length = 460

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 20/72 (27%), Positives = 31/72 (43%)
 Frame = +1

Query: 232 PXRSNRGVRCAHDPRRTCPAHEMETGQRKILPAVVVSDKSEHATSCDARDEKGLPQTAQY 411
           P +SN G   A       P  +++       PA V  DKS   ++   R EK   Q  +Y
Sbjct: 329 PEKSNGGSIYATALPAIVPPDQVQKASSIRKPATVTPDKSIKKSASRKRSEKQEMQLVRY 388

Query: 412 RIRDDRSKQSQR 447
            +   +SK+S +
Sbjct: 389 ELTPKKSKKSAK 400


>U00036-12|AAK29854.2|  237|Caenorhabditis elegans Hypothetical
           protein R151.6 protein.
          Length = 237

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 20/55 (36%), Positives = 31/55 (56%)
 Frame = -2

Query: 224 ILIPIVQFYELIWSFCFTFSF*FNRLRIQL*YTIEFFCICLQKESRRVFRGSHCE 60
           ++I   QF+ LI SFCF  SF F+ L   + +T   +C+ L++ S   FRG   +
Sbjct: 45  LIIRKYQFWRLITSFCFFGSFGFSFL-FNMIFTYR-YCMMLEEGS---FRGRRAD 94


>AF143152-1|AAD37863.1|  237|Caenorhabditis elegans putative NADH
           oxidoreductase complexI subunit protein.
          Length = 237

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 20/55 (36%), Positives = 31/55 (56%)
 Frame = -2

Query: 224 ILIPIVQFYELIWSFCFTFSF*FNRLRIQL*YTIEFFCICLQKESRRVFRGSHCE 60
           ++I   QF+ LI SFCF  SF F+ L   + +T   +C+ L++ S   FRG   +
Sbjct: 45  LIIRKYQFWRLITSFCFFGSFGFSFL-FNMIFTYR-YCMMLEEGS---FRGRRAD 94


>AF099003-3|ABA00149.1|  759|Caenorhabditis elegans Hypothetical
           protein Y59C2A.3 protein.
          Length = 759

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = +1

Query: 328 AVVVSDKSEHATSCDARDEKGLPQTAQY--RIRDDRSKQSQRRGNGHSISV 474
           A + SD++   ++  A++++     A+Y     +DRS  +QRR   HS+ V
Sbjct: 179 ASISSDQNGDGSNMTAKEKRAAADRARYLRMSEEDRSALNQRRREKHSVDV 229


>AF003386-14|AAK82896.1|  811|Caenorhabditis elegans Hypothetical
           protein F59E12.1 protein.
          Length = 811

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +2

Query: 356 TPRAVMQETKKAFRKLPNIESAMTALSNLKG 448
           TP   +   +  FRK PN+E  MTA  + KG
Sbjct: 776 TPAGNVGMKRTVFRKDPNVEGIMTASGSRKG 806


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,376,479
Number of Sequences: 27780
Number of extensions: 375339
Number of successful extensions: 973
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 973
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)