BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0501 (720 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value U88178-4|AAC24411.1| 460|Caenorhabditis elegans Hypothetical pr... 30 1.4 U00036-12|AAK29854.2| 237|Caenorhabditis elegans Hypothetical p... 29 3.3 AF143152-1|AAD37863.1| 237|Caenorhabditis elegans putative NADH... 29 3.3 AF099003-3|ABA00149.1| 759|Caenorhabditis elegans Hypothetical ... 29 4.4 AF003386-14|AAK82896.1| 811|Caenorhabditis elegans Hypothetical... 28 7.7 >U88178-4|AAC24411.1| 460|Caenorhabditis elegans Hypothetical protein W09C3.2 protein. Length = 460 Score = 30.3 bits (65), Expect = 1.4 Identities = 20/72 (27%), Positives = 31/72 (43%) Frame = +1 Query: 232 PXRSNRGVRCAHDPRRTCPAHEMETGQRKILPAVVVSDKSEHATSCDARDEKGLPQTAQY 411 P +SN G A P +++ PA V DKS ++ R EK Q +Y Sbjct: 329 PEKSNGGSIYATALPAIVPPDQVQKASSIRKPATVTPDKSIKKSASRKRSEKQEMQLVRY 388 Query: 412 RIRDDRSKQSQR 447 + +SK+S + Sbjct: 389 ELTPKKSKKSAK 400 >U00036-12|AAK29854.2| 237|Caenorhabditis elegans Hypothetical protein R151.6 protein. Length = 237 Score = 29.1 bits (62), Expect = 3.3 Identities = 20/55 (36%), Positives = 31/55 (56%) Frame = -2 Query: 224 ILIPIVQFYELIWSFCFTFSF*FNRLRIQL*YTIEFFCICLQKESRRVFRGSHCE 60 ++I QF+ LI SFCF SF F+ L + +T +C+ L++ S FRG + Sbjct: 45 LIIRKYQFWRLITSFCFFGSFGFSFL-FNMIFTYR-YCMMLEEGS---FRGRRAD 94 >AF143152-1|AAD37863.1| 237|Caenorhabditis elegans putative NADH oxidoreductase complexI subunit protein. Length = 237 Score = 29.1 bits (62), Expect = 3.3 Identities = 20/55 (36%), Positives = 31/55 (56%) Frame = -2 Query: 224 ILIPIVQFYELIWSFCFTFSF*FNRLRIQL*YTIEFFCICLQKESRRVFRGSHCE 60 ++I QF+ LI SFCF SF F+ L + +T +C+ L++ S FRG + Sbjct: 45 LIIRKYQFWRLITSFCFFGSFGFSFL-FNMIFTYR-YCMMLEEGS---FRGRRAD 94 >AF099003-3|ABA00149.1| 759|Caenorhabditis elegans Hypothetical protein Y59C2A.3 protein. Length = 759 Score = 28.7 bits (61), Expect = 4.4 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 2/51 (3%) Frame = +1 Query: 328 AVVVSDKSEHATSCDARDEKGLPQTAQY--RIRDDRSKQSQRRGNGHSISV 474 A + SD++ ++ A++++ A+Y +DRS +QRR HS+ V Sbjct: 179 ASISSDQNGDGSNMTAKEKRAAADRARYLRMSEEDRSALNQRRREKHSVDV 229 >AF003386-14|AAK82896.1| 811|Caenorhabditis elegans Hypothetical protein F59E12.1 protein. Length = 811 Score = 27.9 bits (59), Expect = 7.7 Identities = 13/31 (41%), Positives = 17/31 (54%) Frame = +2 Query: 356 TPRAVMQETKKAFRKLPNIESAMTALSNLKG 448 TP + + FRK PN+E MTA + KG Sbjct: 776 TPAGNVGMKRTVFRKDPNVEGIMTASGSRKG 806 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 17,376,479 Number of Sequences: 27780 Number of extensions: 375339 Number of successful extensions: 973 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 943 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 973 length of database: 12,740,198 effective HSP length: 79 effective length of database: 10,545,578 effective search space used: 1687292480 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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