Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0501
(720 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g12210.2 68416.m01524 expressed protein 62 4e-10
At3g12210.1 68416.m01523 expressed protein 62 4e-10
At1g61980.1 68414.m06991 mitochondrial transcription termination... 32 0.33
At5g26020.1 68418.m03096 hypothetical protein 32 0.44
At5g20420.1 68418.m02428 SNF2 domain-containing protein / helica... 31 0.77
At1g61960.1 68414.m06989 mitochondrial transcription termination... 30 1.8
At1g69440.1 68414.m07979 PAZ domain-containing protein / piwi do... 29 2.3
At1g61990.1 68414.m06992 mitochondrial transcription termination... 29 3.1
At1g62110.1 68414.m07008 mitochondrial transcription termination... 29 4.1
At4g02020.1 68417.m00272 zeste-like protein 1 (EZA1) identical t... 28 7.2
At1g62150.1 68414.m07011 mitochondrial transcription termination... 28 7.2
At4g32820.1 68417.m04668 expressed protein ; expression supporte... 27 9.5
At3g48430.1 68416.m05287 zinc finger (C2H2 type) family protein ... 27 9.5
At2g23380.1 68415.m02792 curly leaf protein (CURLY LEAF) / polyc... 27 9.5
At1g62085.1 68414.m07006 mitochondrial transcription termination... 27 9.5
At1g61970.1 68414.m06990 mitochondrial transcription termination... 27 9.5
At1g12220.1 68414.m01414 disease resistance protein RPS5 (CC-NBS... 27 9.5
At1g10600.1 68414.m01200 mov34 family protein similar to AMSH [H... 27 9.5
>At3g12210.2 68416.m01524 expressed protein
Length = 209
Score = 62.1 bits (144), Expect = 4e-10
Identities = 32/82 (39%), Positives = 45/82 (54%)
Frame = +2
Query: 263 HMIHEELVQLMKWKQARGKFYPQLSYLIKVNTPRAVMQETKKAFRKLPNIESAMTALSNL 442
++ EL QLMKWK +RGK+ P+L + V ++KAF+ LP+I A+ L+ L
Sbjct: 55 YLTTSELSQLMKWKLSRGKWRPRLLDFVSSLDDSVVKSASEKAFKSLPDISKAVKELTVL 114
Query: 443 KGVGXXXXXXXXXXXXPEIAPF 508
KGVG P+IAPF
Sbjct: 115 KGVGAATASAVLAAYAPDIAPF 136
>At3g12210.1 68416.m01523 expressed protein
Length = 155
Score = 62.1 bits (144), Expect = 4e-10
Identities = 32/82 (39%), Positives = 45/82 (54%)
Frame = +2
Query: 263 HMIHEELVQLMKWKQARGKFYPQLSYLIKVNTPRAVMQETKKAFRKLPNIESAMTALSNL 442
++ EL QLMKWK +RGK+ P+L + V ++KAF+ LP+I A+ L+ L
Sbjct: 55 YLTTSELSQLMKWKLSRGKWRPRLLDFVSSLDDSVVKSASEKAFKSLPDISKAVKELTVL 114
Query: 443 KGVGXXXXXXXXXXXXPEIAPF 508
KGVG P+IAPF
Sbjct: 115 KGVGAATASAVLAAYAPDIAPF 136
>At1g61980.1 68414.m06991 mitochondrial transcription termination
factor-related / mTERF-related contains Pfam profile
PF02536: mTERF
Length = 418
Score = 32.3 bits (70), Expect = 0.33
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +3
Query: 117 EFDSVLKLYPQAIKLKAERKTKRPDELIKLDNW 215
EF ++K +PQ I L AE K+ + L+K NW
Sbjct: 308 EFSVLIKRFPQGIGLSAEMVKKKTEFLVKKMNW 340
>At5g26020.1 68418.m03096 hypothetical protein
Length = 241
Score = 31.9 bits (69), Expect = 0.44
Identities = 16/60 (26%), Positives = 28/60 (46%)
Frame = +1
Query: 376 RDEKGLPQTAQYRIRDDRSKQSQRRGNGHSISVISCR*SRNSTVLADECVQAIPEMEGSD 555
RDE G P T + ++ + + ++QRRG G S + S A + + + E+ D
Sbjct: 106 RDETGTPMTQRKKVCEPEASKTQRRGKGDEASASKTERRKKSEAEASKKPKKVFEISDED 165
>At5g20420.1 68418.m02428 SNF2 domain-containing protein / helicase
domain-containing protein low similarity to SP|Q9U7E0
Transcriptional regulator ATRX homolog {Caenorhabditis
elegans}; contains PFam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain
Length = 1261
Score = 31.1 bits (67), Expect = 0.77
Identities = 17/61 (27%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
Frame = +2
Query: 275 EELVQLMKWKQARGKFYPQLSYLIKVNTPRAVM-----QETKKAFRKLPNIESAMTALSN 439
E+ LMK + + GKF P LS+L +T ++++ +TK ++ + + E + + LS+
Sbjct: 169 EDCTSLMKTRLSLGKFLPDLSWLTVTSTLKSIVFQIRTVQTKMVYQIVTDEEGSSSTLSS 228
Query: 440 L 442
+
Sbjct: 229 M 229
>At1g61960.1 68414.m06989 mitochondrial transcription termination
factor-related / mTERF-related contains Pfam profile
PF02536: mTERF
Length = 457
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 117 EFDSVLKLYPQAIKLKAERKTKRPDELIKLDNW 215
EF ++K YPQ I AE K+ + ++K NW
Sbjct: 344 EFAMMVKRYPQCIDYTAETVKKKTEFIVKNMNW 376
>At1g69440.1 68414.m07979 PAZ domain-containing protein / piwi
domain-containing protein similar to SP|Q9XGW1 PINHEAD
protein (ZWILLE protein) {Arabidopsis thaliana};
contains Pfam profiles PF02171: Piwi domain, PF02170:
PAZ domain
Length = 990
Score = 29.5 bits (63), Expect = 2.3
Identities = 19/53 (35%), Positives = 27/53 (50%)
Frame = +3
Query: 36 TQCCTFRTFTMATAKDTSTFFLEANAKEFDSVLKLYPQAIKLKAERKTKRPDE 194
TQCC + T +++ S L+ NAK S+ +LY +I R RPDE
Sbjct: 676 TQCCLYPNITKLSSQFVSNLALKINAKIGGSMTELY-NSIPSHIPR-LLRPDE 726
>At1g61990.1 68414.m06992 mitochondrial transcription termination
factor-related / mTERF-related contains Pfam profile
PF02536: mTERF
Length = 414
Score = 29.1 bits (62), Expect = 3.1
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +3
Query: 78 KDTSTFF-LEANAKEFDSVLKLYPQAIKLKAERKTKRPDELIKLDNWYQNEL 230
K TF L + EF ++K YP I+ E K+ + L+K W +N L
Sbjct: 287 KSAETFLDLGYSRAEFLMMVKRYPPCIEYSVESVKKKNEFLVKKMKWPRNAL 338
>At1g62110.1 68414.m07008 mitochondrial transcription termination
factor family protein / mTERF family protein contains
Pfam profile PF02536: mTERF
Length = 462
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +3
Query: 117 EFDSVLKLYPQAIKLKAERKTKRPDELIKLDNW 215
EF +++K +PQ + L AE K+ + ++K NW
Sbjct: 345 EFITMVKRFPQCLILSAETVKKKIEFVVKKMNW 377
>At4g02020.1 68417.m00272 zeste-like protein 1 (EZA1) identical to
enhancer of zeste-like protein 1(EZA1) (GI:4185507)
[Arabidopsis thaliana]; similar to polycomb group
[Arabidopsis thaliana] GI:1903019 (curly leaf); contains
Pfam profile PF00856: SET domain
Length = 856
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -2
Query: 122 EFFCICLQKESRRVFRGSHCERSKC 48
E +C C K + FRG HC +S+C
Sbjct: 631 EKYCGC-SKSCKNRFRGCHCAKSQC 654
>At1g62150.1 68414.m07011 mitochondrial transcription termination
factor-related / mTERF-related contains Pfam profile
PF02536: mTERF
Length = 463
Score = 27.9 bits (59), Expect = 7.2
Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Frame = +3
Query: 18 AVVKLNTQCCTFRTFTMATAKDTSTFF-LEANAKEFDSVLKLYPQAIKLKAERKTKRPDE 194
+V K N C R TF L + EF ++K PQ I AE K+ +
Sbjct: 319 SVFKKNPLC--LRASEQQILNSMETFIGLGFSRDEFVMMVKCLPQCIGYSAEMVKKKTEF 376
Query: 195 LIKLDNW 215
++K NW
Sbjct: 377 VVKKMNW 383
>At4g32820.1 68417.m04668 expressed protein ; expression supported
by MPSS
Length = 1817
Score = 27.5 bits (58), Expect = 9.5
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +3
Query: 78 KDTSTFFLEANAKEFDSVLKLYPQAIKLKAE 170
K+ +T FLE + +++ L Y QAI L A+
Sbjct: 85 KNLATVFLELGSSHYENALNCYLQAIDLDAK 115
>At3g48430.1 68416.m05287 zinc finger (C2H2 type) family protein /
transcription factor jumonji (jmj) family protein
contains Pfam domains PF02375: jmjN domain, PF02373: jmjC
domain and PF00096: Zinc finger, C2H2 type
Length = 1354
Score = 27.5 bits (58), Expect = 9.5
Identities = 15/48 (31%), Positives = 20/48 (41%)
Frame = +1
Query: 514 DECVQAIPEMEGSDYTAREYLNFVSHIRNVCDRLNEEQNGCGKKWFPH 657
+EC MEG + + H RN+C GCGK +F H
Sbjct: 1232 EECAAYQCNMEGCTMSFSSEKQLMLHKRNIC-----PIKGCGKNFFSH 1274
>At2g23380.1 68415.m02792 curly leaf protein (CURLY LEAF) /
polycomb-group protein identical to polycomb group
[Arabidopsis thaliana] GI:1903019 (curly leaf); contains
Pfam profile PF00856: SET domain
Length = 902
Score = 27.5 bits (58), Expect = 9.5
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -2
Query: 122 EFFCICLQKESRRVFRGSHCERSKC 48
E +C C K + FRG HC +S+C
Sbjct: 675 EKYCGC-PKSCKNRFRGCHCAKSQC 698
>At1g62085.1 68414.m07006 mitochondrial transcription termination
factor family protein / mTERF family protein contains
Pfam profile PF02536: mTERF
Length = 461
Score = 27.5 bits (58), Expect = 9.5
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +3
Query: 117 EFDSVLKLYPQAIKLKAERKTKRPDELIKLDNW 215
E + K +PQ + L AE K+ + L+K NW
Sbjct: 348 EVAMIAKRFPQCLILSAETVKKKTEFLVKKMNW 380
>At1g61970.1 68414.m06990 mitochondrial transcription termination
factor-related / mTERF-related contains Pfam profile
PF02536: mTERF
Length = 418
Score = 27.5 bits (58), Expect = 9.5
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +3
Query: 117 EFDSVLKLYPQAIKLKAERKTKRPDELIKLDNW 215
EF ++K +P I L E K+ + L+K NW
Sbjct: 308 EFAKMVKHFPPCIGLSTETVKKKTEFLVKKMNW 340
>At1g12220.1 68414.m01414 disease resistance protein RPS5
(CC-NBS-LRR class) / resistance to Pseudomonas syringae
protein 5 (CC-NBS-LRR class) domain signature CC-NBS-LRR
exists, suggestive of a disease resistance protein.
Identical to RPS5 (resistance to Pseudomonas syringae
protein 5)(gi:3309620)
Length = 889
Score = 27.5 bits (58), Expect = 9.5
Identities = 19/60 (31%), Positives = 26/60 (43%)
Frame = +1
Query: 532 IPEMEGSDYTAREYLNFVSHIRNVCDRLNEEQNGCGKKWFPHMVELALWTHNIVSDLQPQ 711
I E EG + + + + C L EE+N K + E+ALW I SDL Q
Sbjct: 439 INEKEGRERNINQGYEIIGTLVRACLLLEEERNKSNVKMHDVVREMALW---ISSDLGKQ 495
>At1g10600.1 68414.m01200 mov34 family protein similar to AMSH [Homo
sapiens] GI:4098124; contains Pfam profile PF01398:
Mov34/MPN/PAD-1 family
Length = 271
Score = 27.5 bits (58), Expect = 9.5
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -3
Query: 682 ASRGPALPCVETISCRSRFVPRL 614
+S P+L CVE ++C+S V R+
Sbjct: 5 SSPSPSLSCVENVTCKSSHVSRV 27
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,364,847
Number of Sequences: 28952
Number of extensions: 347215
Number of successful extensions: 900
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 900
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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