Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0500
(613 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19G7.06 |mbx1||MADS-box transcription factor Mbx1|Schizosacc... 27 1.6
SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr 2|... 27 1.6
SPCC1739.04c |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 27 2.1
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 2.8
SPBC27B12.09c |||FAD transporter|Schizosaccharomyces pombe|chr 2... 26 4.9
SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inosito... 25 6.5
SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1 |Sc... 25 8.6
SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy... 25 8.6
SPCC4B3.07 |||nuclear pore associated protein|Schizosaccharomyce... 25 8.6
>SPBC19G7.06 |mbx1||MADS-box transcription factor
Mbx1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 436
Score = 27.5 bits (58), Expect = 1.6
Identities = 20/70 (28%), Positives = 30/70 (42%)
Frame = +1
Query: 238 PSQRRDPSQRPEHRDPQDYTALNERKSQDKHTENLIPNLTNSHKSYGYTGIDKDESIVSQ 417
PS S PE +P L+ + + T+N IP LT ++YG + D S V +
Sbjct: 184 PSSSSSFSVPPESLNP----TLSFQHNDVPQTDNFIPFLTPKRQAYGQSSSRADRSSVRR 239
Query: 418 DKVAFTNDNG 447
+ NG
Sbjct: 240 SQSFKNRRNG 249
>SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 554
Score = 27.5 bits (58), Expect = 1.6
Identities = 17/60 (28%), Positives = 25/60 (41%)
Frame = +1
Query: 202 NHRKTKP*STS*PSQRRDPSQRPEHRDPQDYTALNERKSQDKHTENLIPNLTNSHKSYGY 381
NH +P + P+ P + DP D+ +L S + E LI L N KS +
Sbjct: 151 NHFAYEPGTRENPAVPFLPPLYTHNHDPVDHKSLKNFYSSNYFAEKLIDQLKNREKSQSF 210
>SPCC1739.04c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 288
Score = 27.1 bits (57), Expect = 2.1
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = +1
Query: 388 IDKDESIVSQDKVAFTNDNGNLYQSKESRSENF-RNLNTGYLPKIIYVQ 531
I +ES+ DK F QS +SENF + L + L I+ VQ
Sbjct: 208 IQNEESVKRPDKSPFDTMTEATLQSSSDKSENFTKTLLSNVLSTILSVQ 256
>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 977
Score = 26.6 bits (56), Expect = 2.8
Identities = 20/65 (30%), Positives = 34/65 (52%)
Frame = +1
Query: 322 DKHTENLIPNLTNSHKSYGYTGIDKDESIVSQDKVAFTNDNGNLYQSKESRSENFRNLNT 501
D+ E L+ S ++G D+SI+ D V+ +DN +LYQ +NF NL++
Sbjct: 19 DESNELFFSALSESSMNHG----TPDDSILL-DLVS-RSDNKDLYQDSLDVRDNFSNLSS 72
Query: 502 GYLPK 516
+P+
Sbjct: 73 DEIPQ 77
>SPBC27B12.09c |||FAD transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 277
Score = 25.8 bits (54), Expect = 4.9
Identities = 17/47 (36%), Positives = 22/47 (46%)
Frame = +2
Query: 395 RTSLLLVKTKWRLQMIMGIYIKVKNLVPKTSGTSTQDTCPKLFMYRQ 535
R+ + LV WRLQ I+G Y K +P Q TC +Y Q
Sbjct: 222 RSIMNLVLQTWRLQGILGFY---KGFLPHLLRVVPQ-TCITFLVYEQ 264
>SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inositol
pyrophosphate synthase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 920
Score = 25.4 bits (53), Expect = 6.5
Identities = 19/71 (26%), Positives = 32/71 (45%)
Frame = +1
Query: 241 SQRRDPSQRPEHRDPQDYTALNERKSQDKHTENLIPNLTNSHKSYGYTGIDKDESIVSQD 420
S++ DPS+ E D Y AL+ R+ L Y Y + + S+++++
Sbjct: 665 SEKADPSKVSELYDTLKYDALHNRQF-----------LERIFTPYQYLKLPQSPSLIAKE 713
Query: 421 KVAFTNDNGNL 453
T+ NGNL
Sbjct: 714 PPQRTDSNGNL 724
>SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 899
Score = 25.0 bits (52), Expect = 8.6
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Frame = +2
Query: 194 GDLIIERRNHKVPHDLRNV---EIQVRDQNIATLKITRLLMNESLRISI 331
GDL+I + +VP DLR V E+++ + N+ R +E++ +I
Sbjct: 139 GDLVILQIGDRVPADLRIVEATELEIDESNLTGENSPRKKSSEAISSNI 187
>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1010
Score = 25.0 bits (52), Expect = 8.6
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Frame = +2
Query: 275 IATLKITRLLMNESLRISILKI*YLT*QIVINPMVTLV*I-RTSLLLVKTKWRLQMIMGI 451
++ L + N LR + +I Y Q + L+ + RTS V T+W L +M
Sbjct: 618 VSFLTQANYIKNPYLRAKLAEILYFGVQTHVGRSELLLDVVRTSK--VATRWLLPALMAF 675
Query: 452 YIKVKNLVPKTSGTSTQ 502
YI++ +++G STQ
Sbjct: 676 YIEI-----ESTGQSTQ 687
>SPCC4B3.07 |||nuclear pore associated protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 393
Score = 25.0 bits (52), Expect = 8.6
Identities = 14/52 (26%), Positives = 24/52 (46%)
Frame = +1
Query: 388 IDKDESIVSQDKVAFTNDNGNLYQSKESRSENFRNLNTGYLPKIIYVQTDGL 543
+ K + + Q + A +GN SKE+ SEN N ++Y + D +
Sbjct: 15 LKKQQQLEKQKQEASYELSGNSSPSKENGSENVDNGEMEDETMLVYTEEDNI 66
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,424,482
Number of Sequences: 5004
Number of extensions: 48559
Number of successful extensions: 139
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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