Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0500
         (613 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0381 + 28878811-28879120,28880189-28880331,28880753-288815...    32   0.31 
12_01_0171 - 1268803-1269500,1271491-1271567,1271941-1272065,127...    29   2.2  
02_05_1290 - 35500515-35500897,35501560-35502031,35502174-35502212     29   2.9  
06_03_1072 + 27365834-27365945,27366360-27366464,27366844-273669...    28   6.7  
01_06_1792 - 39912714-39913559                                         28   6.7  
04_04_1189 + 31586991-31587291,31587358-31587397,31587449-315875...    27   8.9  

>01_06_0381 +
           28878811-28879120,28880189-28880331,28880753-28881532,
           28882568-28883968
          Length = 877

 Score = 32.3 bits (70), Expect = 0.31
 Identities = 14/51 (27%), Positives = 23/51 (45%)
 Frame = +1

Query: 178 QHSRSWRPNHRKTKP*STS*PSQRRDPSQRPEHRDPQDYTALNERKSQDKH 330
           +HS+   P H + +  S+    + R    R  HRD   Y   +E +S  +H
Sbjct: 762 RHSKDLEPRHHRHRDSSSEDEHEHRSSKSRHRHRDDYHYHEDDEHRSSHRH 812


>12_01_0171 -
           1268803-1269500,1271491-1271567,1271941-1272065,
           1272146-1272234,1272851-1272936,1273509-1273765
          Length = 443

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = +1

Query: 277 RDPQDYTALNERKSQDKHTENLIPNLTNSHKSYGYTGIDKDESIVSQDKVAFTND 441
           ++PQ   AL+E    D  +EN +  L++S  +   T  D +E + + D     N+
Sbjct: 264 QEPQVVPALHEEPQDDDRSENAVQELSSSEAN---TSSDNNEPLAADDSAECMNE 315


>02_05_1290 - 35500515-35500897,35501560-35502031,35502174-35502212
          Length = 297

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +2

Query: 392 IRTSLLLVKTKWRLQMIMGIYIKVKNLVPKTSGTSTQDTCP 514
           +RT LL  +T     M+  ++I++ + VP+    + +DT P
Sbjct: 44  VRTCLLSKRTLHLRHMLSNLHIRINSFVPRCGYATLKDTIP 84


>06_03_1072 +
           27365834-27365945,27366360-27366464,27366844-27366929,
           27367445-27367631,27368031-27368142,27368235-27368337,
           27368424-27368469,27368670-27368708,27368803-27368959,
           27369031-27369133,27369337-27369453,27369880-27369957,
           27370044-27370145,27370252-27370345,27370432-27370542,
           27370643-27370707,27370949-27371097,27371349-27371581,
           27371778-27371908,27372016-27372126,27372210-27372326
          Length = 785

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = +1

Query: 355 TNSHKSYGYTGIDKDESIVSQDKVAFTNDNGNLYQSKESRSENFRNLNTG 504
           ++ ++S  YTG+       +Q K+ F N+   L  S+ES S+    LN+G
Sbjct: 618 SSKYRSCTYTGLRDRPCRDTQSKLNFVNEGQLLLISEESISDLNSRLNSG 667


>01_06_1792 - 39912714-39913559
          Length = 281

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 22/95 (23%), Positives = 39/95 (41%), Gaps = 3/95 (3%)
 Frame = +1

Query: 229 TS*PSQRRDPSQRPEHRDPQDYTALNERKSQDKHTENLIPNLTNSHKSYGYTGIDKDESI 408
           +S P +     +  + +D Q YT+ N     D   +     +T+SHK   +   +KD + 
Sbjct: 28  SSSPPRGAGDKKETKTKDYQSYTSNNNNNGSDDDKDKNKHKITSSHK---HKDDEKDRNN 84

Query: 409 VSQDKVA---FTNDNGNLYQSKESRSENFRNLNTG 504
            S+D       +N N + Y        N+   +TG
Sbjct: 85  HSKDSHGGGNSSNYNKDSYGGNSGNPNNYYGSSTG 119


>04_04_1189 + 31586991-31587291,31587358-31587397,31587449-31587534,
            31587535-31588097,31588250-31589913,31589956-31590066,
            31590152-31591181,31591234-31591406,31591535-31591814,
            31592275-31592331
          Length = 1434

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
 Frame = +1

Query: 343  IPNLTNSHKSYGYTGIDKDESIVSQDKV-AFTNDNG 447
            IP      K YG   I  DE I+  DK+ AF N  G
Sbjct: 1022 IPTYPTMEKEYGQLSITSDELIMLDDKILAFHNLRG 1057


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,441,616
Number of Sequences: 37544
Number of extensions: 271438
Number of successful extensions: 587
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 587
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)