BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0500 (613 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 01_06_0381 + 28878811-28879120,28880189-28880331,28880753-288815... 32 0.31 12_01_0171 - 1268803-1269500,1271491-1271567,1271941-1272065,127... 29 2.2 02_05_1290 - 35500515-35500897,35501560-35502031,35502174-35502212 29 2.9 06_03_1072 + 27365834-27365945,27366360-27366464,27366844-273669... 28 6.7 01_06_1792 - 39912714-39913559 28 6.7 04_04_1189 + 31586991-31587291,31587358-31587397,31587449-315875... 27 8.9 >01_06_0381 + 28878811-28879120,28880189-28880331,28880753-28881532, 28882568-28883968 Length = 877 Score = 32.3 bits (70), Expect = 0.31 Identities = 14/51 (27%), Positives = 23/51 (45%) Frame = +1 Query: 178 QHSRSWRPNHRKTKP*STS*PSQRRDPSQRPEHRDPQDYTALNERKSQDKH 330 +HS+ P H + + S+ + R R HRD Y +E +S +H Sbjct: 762 RHSKDLEPRHHRHRDSSSEDEHEHRSSKSRHRHRDDYHYHEDDEHRSSHRH 812 >12_01_0171 - 1268803-1269500,1271491-1271567,1271941-1272065, 1272146-1272234,1272851-1272936,1273509-1273765 Length = 443 Score = 29.5 bits (63), Expect = 2.2 Identities = 15/55 (27%), Positives = 27/55 (49%) Frame = +1 Query: 277 RDPQDYTALNERKSQDKHTENLIPNLTNSHKSYGYTGIDKDESIVSQDKVAFTND 441 ++PQ AL+E D +EN + L++S + T D +E + + D N+ Sbjct: 264 QEPQVVPALHEEPQDDDRSENAVQELSSSEAN---TSSDNNEPLAADDSAECMNE 315 >02_05_1290 - 35500515-35500897,35501560-35502031,35502174-35502212 Length = 297 Score = 29.1 bits (62), Expect = 2.9 Identities = 12/41 (29%), Positives = 23/41 (56%) Frame = +2 Query: 392 IRTSLLLVKTKWRLQMIMGIYIKVKNLVPKTSGTSTQDTCP 514 +RT LL +T M+ ++I++ + VP+ + +DT P Sbjct: 44 VRTCLLSKRTLHLRHMLSNLHIRINSFVPRCGYATLKDTIP 84 >06_03_1072 + 27365834-27365945,27366360-27366464,27366844-27366929, 27367445-27367631,27368031-27368142,27368235-27368337, 27368424-27368469,27368670-27368708,27368803-27368959, 27369031-27369133,27369337-27369453,27369880-27369957, 27370044-27370145,27370252-27370345,27370432-27370542, 27370643-27370707,27370949-27371097,27371349-27371581, 27371778-27371908,27372016-27372126,27372210-27372326 Length = 785 Score = 27.9 bits (59), Expect = 6.7 Identities = 16/50 (32%), Positives = 27/50 (54%) Frame = +1 Query: 355 TNSHKSYGYTGIDKDESIVSQDKVAFTNDNGNLYQSKESRSENFRNLNTG 504 ++ ++S YTG+ +Q K+ F N+ L S+ES S+ LN+G Sbjct: 618 SSKYRSCTYTGLRDRPCRDTQSKLNFVNEGQLLLISEESISDLNSRLNSG 667 >01_06_1792 - 39912714-39913559 Length = 281 Score = 27.9 bits (59), Expect = 6.7 Identities = 22/95 (23%), Positives = 39/95 (41%), Gaps = 3/95 (3%) Frame = +1 Query: 229 TS*PSQRRDPSQRPEHRDPQDYTALNERKSQDKHTENLIPNLTNSHKSYGYTGIDKDESI 408 +S P + + + +D Q YT+ N D + +T+SHK + +KD + Sbjct: 28 SSSPPRGAGDKKETKTKDYQSYTSNNNNNGSDDDKDKNKHKITSSHK---HKDDEKDRNN 84 Query: 409 VSQDKVA---FTNDNGNLYQSKESRSENFRNLNTG 504 S+D +N N + Y N+ +TG Sbjct: 85 HSKDSHGGGNSSNYNKDSYGGNSGNPNNYYGSSTG 119 >04_04_1189 + 31586991-31587291,31587358-31587397,31587449-31587534, 31587535-31588097,31588250-31589913,31589956-31590066, 31590152-31591181,31591234-31591406,31591535-31591814, 31592275-31592331 Length = 1434 Score = 27.5 bits (58), Expect = 8.9 Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 1/36 (2%) Frame = +1 Query: 343 IPNLTNSHKSYGYTGIDKDESIVSQDKV-AFTNDNG 447 IP K YG I DE I+ DK+ AF N G Sbjct: 1022 IPTYPTMEKEYGQLSITSDELIMLDDKILAFHNLRG 1057 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,441,616 Number of Sequences: 37544 Number of extensions: 271438 Number of successful extensions: 587 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 576 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 587 length of database: 14,793,348 effective HSP length: 79 effective length of database: 11,827,372 effective search space used: 1466594128 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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