Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0500
(613 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46013| Best HMM Match : DUF1129 (HMM E-Value=0.23) 32 0.32
SB_40906| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.97
SB_46036| Best HMM Match : PSRT (HMM E-Value=1) 31 0.97
SB_17622| Best HMM Match : zf-CCHC (HMM E-Value=0.3) 30 1.3
SB_9200| Best HMM Match : Peptidase_A17 (HMM E-Value=4.4e-39) 29 3.0
SB_3143| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.2
SB_28271| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-14) 28 6.9
SB_30230| Best HMM Match : CH (HMM E-Value=0.0035) 27 9.1
SB_43441| Best HMM Match : Lipase (HMM E-Value=8.19998e-41) 27 9.1
SB_20424| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
>SB_46013| Best HMM Match : DUF1129 (HMM E-Value=0.23)
Length = 553
Score = 32.3 bits (70), Expect = 0.32
Identities = 17/67 (25%), Positives = 31/67 (46%)
Frame = +1
Query: 298 ALNERKSQDKHTENLIPNLTNSHKSYGYTGIDKDESIVSQDKVAFTNDNGNLYQSKESRS 477
++N+ + +N I + NS + D D SI D + NDN ++Y + S
Sbjct: 290 SINDNDNSINDNDNSIYDNDNSINDNDNSINDNDNSINDNDNSIYDNDNSSIYDNDNSIY 349
Query: 478 ENFRNLN 498
+N ++N
Sbjct: 350 DNDNSIN 356
>SB_40906| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 154
Score = 30.7 bits (66), Expect = 0.97
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Frame = +1
Query: 247 RRDPSQRPEHRDPQDYTALNERKSQDKHTENLIPNLT-NSHKSYGYTGIDKDESIVSQDK 423
RR ++ E D ++E + +D+ T N P L N KSY I E ++ ++
Sbjct: 23 RRAKWRKREKSKGDDDGNVDENEPKDEETANQTPTLKDNDEKSYYKVDIPSSEQRITVEE 82
Query: 424 VAFTNDNGNLYQSKES 471
+ + G+L KES
Sbjct: 83 RSDDSTRGHLGSPKES 98
>SB_46036| Best HMM Match : PSRT (HMM E-Value=1)
Length = 878
Score = 30.7 bits (66), Expect = 0.97
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +1
Query: 184 SRSWR-PNHRKTKP*STS*PSQRRDPSQRPEHRDPQDYTALNERKS 318
SRS+ P R+T P + S P +RR PS R P+ + RKS
Sbjct: 542 SRSYTSPRQRRTSPNNRSPPPRRRSPSPRRPSPSPRRRSTSPSRKS 587
>SB_17622| Best HMM Match : zf-CCHC (HMM E-Value=0.3)
Length = 374
Score = 30.3 bits (65), Expect = 1.3
Identities = 20/83 (24%), Positives = 35/83 (42%)
Frame = +1
Query: 199 PNHRKTKP*STS*PSQRRDPSQRPEHRDPQDYTALNERKSQDKHTENLIPNLTNSHKSYG 378
P TK ST P Q Q H T ++++ KHTE + N+ S+
Sbjct: 64 PQLTPTKHSSTPTPIQTHRKPQERIHNVLLTKTEAQKKEALVKHTEKKVCPYHNNAASHN 123
Query: 379 YTGIDKDESIVSQDKVAFTNDNG 447
T + + ++ ++++ F NG
Sbjct: 124 LTECKRFKELLYEERLEFLKSNG 146
>SB_9200| Best HMM Match : Peptidase_A17 (HMM E-Value=4.4e-39)
Length = 1607
Score = 29.1 bits (62), Expect = 3.0
Identities = 20/83 (24%), Positives = 34/83 (40%)
Frame = +1
Query: 199 PNHRKTKP*STS*PSQRRDPSQRPEHRDPQDYTALNERKSQDKHTENLIPNLTNSHKSYG 378
P TK ST P Q Q H T ++++ KHTE + N+ S+
Sbjct: 535 PQLTPTKHSSTPTPIQTHRKPQERIHNVLLTKTEAQKKEALVKHTEKKVCPYHNNAASHN 594
Query: 379 YTGIDKDESIVSQDKVAFTNDNG 447
T + + + ++++ F NG
Sbjct: 595 LTECKRFKELPYEERLEFLKSNG 617
>SB_3143| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 322
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/54 (24%), Positives = 25/54 (46%)
Frame = +1
Query: 244 QRRDPSQRPEHRDPQDYTALNERKSQDKHTENLIPNLTNSHKSYGYTGIDKDES 405
+ D S H + ++E+K ++K ENL+ KSY + ++ +S
Sbjct: 168 ESEDNSLNNSHSENDSKNRVSEKKYEEKTGENLVTETYQEQKSYQNSDYERQKS 221
>SB_28271| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-14)
Length = 686
Score = 27.9 bits (59), Expect = 6.9
Identities = 20/63 (31%), Positives = 33/63 (52%)
Frame = +1
Query: 304 NERKSQDKHTENLIPNLTNSHKSYGYTGIDKDESIVSQDKVAFTNDNGNLYQSKESRSEN 483
N +S H E + + TN +S+ + ES S+ + +FTN + +S ESR+E+
Sbjct: 359 NRAESFTNHFEEIPESPTNRAESFTNHFGEIPESPESRAE-SFTNHFEEIPESPESRAES 417
Query: 484 FRN 492
F N
Sbjct: 418 FTN 420
>SB_30230| Best HMM Match : CH (HMM E-Value=0.0035)
Length = 2440
Score = 27.5 bits (58), Expect = 9.1
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +1
Query: 256 PSQRPEHRDP--QDYTALNERKSQDKHTENLIPNLTNSHKSYGYTGIDKDES 405
P + H+DP + + +E + + +LT+ H+S TG+DK+E+
Sbjct: 208 PERLSTHQDPGVDEGKSRSETELNSARKNSSEVHLTDLHRSQSLTGLDKNEA 259
>SB_43441| Best HMM Match : Lipase (HMM E-Value=8.19998e-41)
Length = 291
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/43 (25%), Positives = 21/43 (48%)
Frame = +1
Query: 283 PQDYTALNERKSQDKHTENLIPNLTNSHKSYGYTGIDKDESIV 411
P Y L++ + + +P+ T +GY G+D +SI+
Sbjct: 63 PDKYEVLSDADTATIEKSSFLPHRTTRFIVHGYAGLDSVDSII 105
>SB_20424| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1711
Score = 27.5 bits (58), Expect = 9.1
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +1
Query: 286 QDYTALNERKSQDKHTENLIPNLTNSHKSYGYTGIDKDESIVSQDK 423
+D T ER+ +D EN+ N+ NS S + ++ I +DK
Sbjct: 989 KDKTLKVERELRDSQQENIKMNIENSKLSRKVSSLESSVEIFEKDK 1034
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,350,040
Number of Sequences: 59808
Number of extensions: 346140
Number of successful extensions: 839
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 833
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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