Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0500
(613 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L47345-1|AAA75492.1| 772|Homo sapiens elongin A protein. 35 0.26
BC002883-1|AAH02883.1| 772|Homo sapiens transcription elongatio... 35 0.26
AL031295-2|CAB40157.1| 772|Homo sapiens transcription elongatio... 35 0.26
X64652-1|CAA45923.1| 372|Homo sapiens 348 aa protein protein. 32 1.4
X77494-1|CAA54628.1| 389|Homo sapiens MSSP-2 protein. 32 1.8
D28482-1|BAA05841.1| 403|Homo sapiens SCR2 protein. 32 1.8
BC018951-1|AAH18951.1| 406|Homo sapiens RNA binding motif, sing... 32 1.8
BC012993-1|AAH12993.1| 403|Homo sapiens RNA binding motif, sing... 32 1.8
BC012992-1|AAH12992.1| 403|Homo sapiens RNA binding motif, sing... 32 1.8
AC104598-1|AAX93183.1| 188|Homo sapiens unknown protein. 32 1.8
D82351-1|BAA11561.1| 373|Homo sapiens MSSP-1 protein. 31 3.2
BC037386-1|AAH37386.1| 494|Homo sapiens PARP8 protein protein. 31 3.2
AL359257-2|CAI39759.1| 4640|Homo sapiens AC001226.5 protein. 31 3.2
AL159158-1|CAI16842.1| 4640|Homo sapiens AC001226.5 protein. 31 3.2
AL159154-1|CAH73736.1| 4640|Homo sapiens AC001226.5 protein. 31 3.2
AF075587-1|AAC39928.1| 4641|Homo sapiens protein associated with... 31 3.2
BC075801-1|AAH75801.1| 812|Homo sapiens PARP8 protein protein. 29 9.8
AK024961-1|BAB15044.1| 501|Homo sapiens protein ( Homo sapiens ... 29 9.8
>L47345-1|AAA75492.1| 772|Homo sapiens elongin A protein.
Length = 772
Score = 34.7 bits (76), Expect = 0.26
Identities = 33/116 (28%), Positives = 51/116 (43%), Gaps = 12/116 (10%)
Frame = +1
Query: 169 WKLQHSRSWRPNHRKTK---------P*STS*PSQRRDPSQRPEHRDPQDYTALNERKSQ 321
WK SRS+ P+HR+ K P S +RRD +R P T ++ +S
Sbjct: 116 WKATGSRSYSPDHRQKKHRKLSELERPHKVSHGHERRDERKRCHRMSP---TYSSDPESS 172
Query: 322 DKHTENLIPNLTNSHKSY--GYTGIDKD-ESIVSQDKVAFTNDNGNLYQSKESRSE 480
D P+ T+ H+ Y Y +++D E IVS K + N +Q + S+
Sbjct: 173 DYGHVQSPPSCTSPHQMYVDHYRSLEEDQEPIVSHQKPG--KGHSNAFQDRLGASQ 226
>BC002883-1|AAH02883.1| 772|Homo sapiens transcription elongation
factor B (SIII), polypeptide 3 (110kDa, elongin A)
protein.
Length = 772
Score = 34.7 bits (76), Expect = 0.26
Identities = 33/116 (28%), Positives = 51/116 (43%), Gaps = 12/116 (10%)
Frame = +1
Query: 169 WKLQHSRSWRPNHRKTK---------P*STS*PSQRRDPSQRPEHRDPQDYTALNERKSQ 321
WK SRS+ P+HR+ K P S +RRD +R P T ++ +S
Sbjct: 116 WKATGSRSYSPDHRQKKHRKLSELERPHKVSHGHERRDERKRCHRMSP---TYSSDPESS 172
Query: 322 DKHTENLIPNLTNSHKSY--GYTGIDKD-ESIVSQDKVAFTNDNGNLYQSKESRSE 480
D P+ T+ H+ Y Y +++D E IVS K + N +Q + S+
Sbjct: 173 DYGHVQSPPSCTSPHQMYVDHYRSLEEDQEPIVSHQKPG--KGHSNAFQDRLGASQ 226
>AL031295-2|CAB40157.1| 772|Homo sapiens transcription elongation
factor B (SIII), polypeptide 3 (110kDa, elongin A)
protein.
Length = 772
Score = 34.7 bits (76), Expect = 0.26
Identities = 33/116 (28%), Positives = 51/116 (43%), Gaps = 12/116 (10%)
Frame = +1
Query: 169 WKLQHSRSWRPNHRKTK---------P*STS*PSQRRDPSQRPEHRDPQDYTALNERKSQ 321
WK SRS+ P+HR+ K P S +RRD +R P T ++ +S
Sbjct: 116 WKATGSRSYSPDHRQKKHRKLSELERPHKVSHGHERRDERKRCHRMSP---TYSSDPESS 172
Query: 322 DKHTENLIPNLTNSHKSY--GYTGIDKD-ESIVSQDKVAFTNDNGNLYQSKESRSE 480
D P+ T+ H+ Y Y +++D E IVS K + N +Q + S+
Sbjct: 173 DYGHVQSPPSCTSPHQMYVDHYRSLEEDQEPIVSHQKPG--KGHSNAFQDRLGASQ 226
>X64652-1|CAA45923.1| 372|Homo sapiens 348 aa protein protein.
Length = 372
Score = 32.3 bits (70), Expect = 1.4
Identities = 21/82 (25%), Positives = 35/82 (42%)
Frame = +1
Query: 268 PEHRDPQDYTALNERKSQDKHTENLIPNLTNSHKSYGYTGIDKDESIVSQDKVAFTNDNG 447
P H QD L + + T+ ++ TN K YG+ +D D +Q V+ +G
Sbjct: 37 PPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGF--VDFDSPAAAQKAVSALKASG 94
Query: 448 NLYQSKESRSENFRNLNTGYLP 513
Q + + ++ NL LP
Sbjct: 95 VQAQKAKQQEQDPTNLYISNLP 116
>X77494-1|CAA54628.1| 389|Homo sapiens MSSP-2 protein.
Length = 389
Score = 31.9 bits (69), Expect = 1.8
Identities = 21/82 (25%), Positives = 35/82 (42%)
Frame = +1
Query: 268 PEHRDPQDYTALNERKSQDKHTENLIPNLTNSHKSYGYTGIDKDESIVSQDKVAFTNDNG 447
P H QD L + + T+ ++ TN K YG+ +D D +Q V+ +G
Sbjct: 37 PPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGF--VDFDSPAAAQKAVSALKASG 94
Query: 448 NLYQSKESRSENFRNLNTGYLP 513
Q + + ++ NL LP
Sbjct: 95 VQAQMAKQQEQDPTNLYISNLP 116
>D28482-1|BAA05841.1| 403|Homo sapiens SCR2 protein.
Length = 403
Score = 31.9 bits (69), Expect = 1.8
Identities = 21/82 (25%), Positives = 35/82 (42%)
Frame = +1
Query: 268 PEHRDPQDYTALNERKSQDKHTENLIPNLTNSHKSYGYTGIDKDESIVSQDKVAFTNDNG 447
P H QD L + + T+ ++ TN K YG+ +D D +Q V+ +G
Sbjct: 70 PPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGF--VDFDSPAAAQKAVSALKASG 127
Query: 448 NLYQSKESRSENFRNLNTGYLP 513
Q + + ++ NL LP
Sbjct: 128 VQAQMAKQQEQDPTNLYISNLP 149
>BC018951-1|AAH18951.1| 406|Homo sapiens RNA binding motif, single
stranded interacting protein 1 protein.
Length = 406
Score = 31.9 bits (69), Expect = 1.8
Identities = 21/82 (25%), Positives = 35/82 (42%)
Frame = +1
Query: 268 PEHRDPQDYTALNERKSQDKHTENLIPNLTNSHKSYGYTGIDKDESIVSQDKVAFTNDNG 447
P H QD L + + T+ ++ TN K YG+ +D D +Q V+ +G
Sbjct: 70 PPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGF--VDFDSPAAAQKAVSALKASG 127
Query: 448 NLYQSKESRSENFRNLNTGYLP 513
Q + + ++ NL LP
Sbjct: 128 VQAQMAKQQEQDPTNLYISNLP 149
>BC012993-1|AAH12993.1| 403|Homo sapiens RNA binding motif, single
stranded interacting protein 1 protein.
Length = 403
Score = 31.9 bits (69), Expect = 1.8
Identities = 21/82 (25%), Positives = 35/82 (42%)
Frame = +1
Query: 268 PEHRDPQDYTALNERKSQDKHTENLIPNLTNSHKSYGYTGIDKDESIVSQDKVAFTNDNG 447
P H QD L + + T+ ++ TN K YG+ +D D +Q V+ +G
Sbjct: 70 PPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGF--VDFDSPAAAQKAVSALKASG 127
Query: 448 NLYQSKESRSENFRNLNTGYLP 513
Q + + ++ NL LP
Sbjct: 128 VQAQMAKQQEQDPTNLYISNLP 149
>BC012992-1|AAH12992.1| 403|Homo sapiens RNA binding motif, single
stranded interacting protein 1 protein.
Length = 403
Score = 31.9 bits (69), Expect = 1.8
Identities = 21/82 (25%), Positives = 35/82 (42%)
Frame = +1
Query: 268 PEHRDPQDYTALNERKSQDKHTENLIPNLTNSHKSYGYTGIDKDESIVSQDKVAFTNDNG 447
P H QD L + + T+ ++ TN K YG+ +D D +Q V+ +G
Sbjct: 70 PPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGF--VDFDSPAAAQKAVSALKASG 127
Query: 448 NLYQSKESRSENFRNLNTGYLP 513
Q + + ++ NL LP
Sbjct: 128 VQAQMAKQQEQDPTNLYISNLP 149
>AC104598-1|AAX93183.1| 188|Homo sapiens unknown protein.
Length = 188
Score = 31.9 bits (69), Expect = 1.8
Identities = 21/82 (25%), Positives = 35/82 (42%)
Frame = +1
Query: 268 PEHRDPQDYTALNERKSQDKHTENLIPNLTNSHKSYGYTGIDKDESIVSQDKVAFTNDNG 447
P H QD L + + T+ ++ TN K YG+ +D D +Q V+ +G
Sbjct: 45 PPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGF--VDFDSPAAAQKAVSALKASG 102
Query: 448 NLYQSKESRSENFRNLNTGYLP 513
Q + + ++ NL LP
Sbjct: 103 VQAQMAKQQEQDPTNLYISNLP 124
>D82351-1|BAA11561.1| 373|Homo sapiens MSSP-1 protein.
Length = 373
Score = 31.1 bits (67), Expect = 3.2
Identities = 21/82 (25%), Positives = 34/82 (41%)
Frame = +1
Query: 268 PEHRDPQDYTALNERKSQDKHTENLIPNLTNSHKSYGYTGIDKDESIVSQDKVAFTNDNG 447
P H QD L + + T ++ TN K YG+ +D D +Q V+ +G
Sbjct: 37 PPHTTDQDLVKLCQPYGKIVSTNAILHKTTNKCKGYGF--VDFDSPAAAQKAVSALKASG 94
Query: 448 NLYQSKESRSENFRNLNTGYLP 513
Q + + ++ NL LP
Sbjct: 95 VQAQMAKQQEQDPTNLYISNLP 116
>BC037386-1|AAH37386.1| 494|Homo sapiens PARP8 protein protein.
Length = 494
Score = 31.1 bits (67), Expect = 3.2
Identities = 11/36 (30%), Positives = 26/36 (72%)
Frame = +1
Query: 370 SYGYTGIDKDESIVSQDKVAFTNDNGNLYQSKESRS 477
S+GY+G++K + + ++D+ A ++ + N QS++ R+
Sbjct: 451 SFGYSGMNKKQKVSAKDEPASSSKSSNTSQSQKKRT 486
>AL359257-2|CAI39759.1| 4640|Homo sapiens AC001226.5 protein.
Length = 4640
Score = 31.1 bits (67), Expect = 3.2
Identities = 13/39 (33%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = +1
Query: 412 SQDKVAFTNDNGNLYQSKESR-SENFRNLNTGYLPKIIY 525
S + + T D+G ++Q K S+ S N ++N G +P+++Y
Sbjct: 1308 SHGQASITTDDGVVFQFKSSKKSNNGTDVNAGQIPQLLY 1346
>AL159158-1|CAI16842.1| 4640|Homo sapiens AC001226.5 protein.
Length = 4640
Score = 31.1 bits (67), Expect = 3.2
Identities = 13/39 (33%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = +1
Query: 412 SQDKVAFTNDNGNLYQSKESR-SENFRNLNTGYLPKIIY 525
S + + T D+G ++Q K S+ S N ++N G +P+++Y
Sbjct: 1308 SHGQASITTDDGVVFQFKSSKKSNNGTDVNAGQIPQLLY 1346
>AL159154-1|CAH73736.1| 4640|Homo sapiens AC001226.5 protein.
Length = 4640
Score = 31.1 bits (67), Expect = 3.2
Identities = 13/39 (33%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = +1
Query: 412 SQDKVAFTNDNGNLYQSKESR-SENFRNLNTGYLPKIIY 525
S + + T D+G ++Q K S+ S N ++N G +P+++Y
Sbjct: 1308 SHGQASITTDDGVVFQFKSSKKSNNGTDVNAGQIPQLLY 1346
>AF075587-1|AAC39928.1| 4641|Homo sapiens protein associated with Myc
protein.
Length = 4641
Score = 31.1 bits (67), Expect = 3.2
Identities = 13/39 (33%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = +1
Query: 412 SQDKVAFTNDNGNLYQSKESR-SENFRNLNTGYLPKIIY 525
S + + T D+G ++Q K S+ S N ++N G +P+++Y
Sbjct: 1308 SHGQASITTDDGVVFQFKSSKKSNNGTDVNAGQIPQLLY 1346
>BC075801-1|AAH75801.1| 812|Homo sapiens PARP8 protein protein.
Length = 812
Score = 29.5 bits (63), Expect = 9.8
Identities = 17/55 (30%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Frame = +1
Query: 370 SYGYTGIDKDESIVSQDKVAFTNDNGNLYQS-KESRSENF---RNLNTGYLPKII 522
S+GY+G++K + + ++D+ A ++ + N QS K+ + F RNL L ++I
Sbjct: 698 SFGYSGMNKKQKVSAKDEPASSSKSSNTSQSQKKGQQSQFLQSRNLKCIALCEVI 752
>AK024961-1|BAB15044.1| 501|Homo sapiens protein ( Homo sapiens
cDNA: FLJ21308 fis, clone COL02131. ).
Length = 501
Score = 29.5 bits (63), Expect = 9.8
Identities = 17/55 (30%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Frame = +1
Query: 370 SYGYTGIDKDESIVSQDKVAFTNDNGNLYQS-KESRSENF---RNLNTGYLPKII 522
S+GY+G++K + + ++D+ A ++ + N QS K+ + F RNL L ++I
Sbjct: 387 SFGYSGMNKKQKVSAKDEPASSSKSSNTSQSQKKGQQSQFLQSRNLKCIALCEVI 441
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,688,742
Number of Sequences: 237096
Number of extensions: 1574305
Number of successful extensions: 3395
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 3298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3394
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6522878360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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