Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0498
(590 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter Ght7|Schizosa... 28 0.89
SPBC32F12.10 |||phosphoglucomutase |Schizosaccharomyces pombe|ch... 27 2.0
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch... 27 2.7
SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion transporter|... 27 2.7
SPCC645.10 |||ATP|Schizosaccharomyces pombe|chr 3|||Manual 27 2.7
SPAC24H6.04 |hxk1||hexokinase 1 |Schizosaccharomyces pombe|chr 1... 27 2.7
SPAC27E2.05 |cdc1|mis1|DNA polymerase delta small subunit Cdc1|S... 26 3.6
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ... 25 6.2
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 25 6.2
SPBC1709.06 |dus2||tRNA dihydrouridine synthase Dus2 |Schizosacc... 25 8.3
>SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter
Ght7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 518
Score = 28.3 bits (60), Expect = 0.89
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -2
Query: 88 CFAVNTHREEHSTTVKWRVN 29
C + TH+ H TT +WR++
Sbjct: 132 CINMGTHKYSHGTTAQWRIS 151
>SPBC32F12.10 |||phosphoglucomutase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 554
Score = 27.1 bits (57), Expect = 2.0
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -1
Query: 479 MMKMVVIVEYLSKIDEAVVPGDGIGNFSSFRYMD 378
M +M I + SK+ EAV+PG + F Y D
Sbjct: 437 MDRMRAIADDKSKVGEAVLPGFVVSEAGDFEYHD 470
>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1092
Score = 26.6 bits (56), Expect = 2.7
Identities = 19/66 (28%), Positives = 29/66 (43%)
Frame = +2
Query: 353 RALHANMGRPYTGRKRSCRCRRQGPRLRQSWKDIRRSLPFSSSFTNEEIPHAAHEHHGRL 532
RAL++ + P T R + Q RLRQ + D +S + +PH + L
Sbjct: 206 RALYSTVDAPETLEPLKHRYKSQHHRLRQFYADCSNLRYLTSLISVPRLPHDPPD----L 261
Query: 533 EGDSRV 550
EGD +
Sbjct: 262 EGDDNI 267
>SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 26.6 bits (56), Expect = 2.7
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Frame = +2
Query: 428 RLRQSWKDIRRS---LPFSSSFTNEEIPHAAHEH 520
R+R W R+S P+ +F +E+P H H
Sbjct: 251 RVRDRWAQFRKSEIEKPYRFTFFTDELPSTIHSH 284
>SPCC645.10 |||ATP|Schizosaccharomyces pombe|chr 3|||Manual
Length = 484
Score = 26.6 bits (56), Expect = 2.7
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +1
Query: 385 YRKEEKLPMPSPGTTASSILERYSTITTIF 474
Y + ++P +PGT + L R T+ T+F
Sbjct: 126 YDDKSRIPSVTPGTVETDALRRDFTVNTLF 155
>SPAC24H6.04 |hxk1||hexokinase 1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 484
Score = 26.6 bits (56), Expect = 2.7
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +3
Query: 366 PTWAVHIPEGREVADAVARDHGFVNL 443
PTW + P+G E +A D G NL
Sbjct: 71 PTWIIGTPDGNEHGSYLALDLGGTNL 96
>SPAC27E2.05 |cdc1|mis1|DNA polymerase delta small subunit
Cdc1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 462
Score = 26.2 bits (55), Expect = 3.6
Identities = 15/50 (30%), Positives = 20/50 (40%)
Frame = -3
Query: 363 CNALVLFQCATEPTPGSRVREHRAPSHGHTHQLVLITLHIHKTV*VDFGP 214
C F C T G+R++ P T LVLI +H + F P
Sbjct: 402 CGNQPKFGCKTVINEGNRIQLVSVPEFRKTGVLVLINMHTLNVEIIQFRP 451
>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 582
Score = 25.4 bits (53), Expect = 6.2
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -3
Query: 336 ATEPTPGSRVREHRAPSHGHTH 271
++ P P + RE+ PSH TH
Sbjct: 31 SSSPLPSNSCREYSLPSHPSTH 52
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 25.4 bits (53), Expect = 6.2
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = -2
Query: 334 DRTDTRIESTRTPRAIARSHSPASTY 257
D T S RTPR RS+SP S Y
Sbjct: 101 DDVVTNSSSHRTPRHHRRSYSPRSDY 126
>SPBC1709.06 |dus2||tRNA dihydrouridine synthase Dus2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 479
Score = 25.0 bits (52), Expect = 8.3
Identities = 9/25 (36%), Positives = 18/25 (72%)
Frame = +2
Query: 65 AVSVYCKTSQCRVVVLSDNAYISKI 139
A++V+C+T+ R +D +Y+S+I
Sbjct: 183 AITVHCRTTPMRNTEPADRSYLSEI 207
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,436,238
Number of Sequences: 5004
Number of extensions: 48441
Number of successful extensions: 135
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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