Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0498
         (590 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0703 + 6212409-6212456,6212661-6212742,6214031-6214106,621...    28   4.8  
06_01_0287 - 2099008-2099023,2099441-2099472,2099776-2099814,209...    28   6.4  
03_03_0094 + 14378953-14380728                                         28   6.4  
03_02_0400 - 8135283-8135490,8136047-8136213,8136289-8136477,813...    28   6.4  
12_01_0407 - 3219980-3221278                                           27   8.5  
10_08_0899 - 21430516-21430652,21431399-21431462,21432136-214321...    27   8.5  
03_01_0206 - 1625020-1625619,1625722-1625931,1626054-1626094,162...    27   8.5  

>08_01_0703 +
           6212409-6212456,6212661-6212742,6214031-6214106,
           6214498-6214594,6214760-6214862,6214973-6215103,
           6215285-6215462,6215528-6215715,6215945-6216154,
           6216231-6216578,6216660-6216786,6217304-6217455
          Length = 579

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = -3

Query: 393 LPVYGRPMLACNALVLFQCATEPTPGSRVREHRAPSHGHTHQLVLITL 250
           L V G P+ A   +V F    +      +RE R+P+ G T     I +
Sbjct: 349 LAVKGDPVSAFGGIVAFNTTIDEDLAKEIREFRSPTDGQTRMFYEIVV 396


>06_01_0287 -
           2099008-2099023,2099441-2099472,2099776-2099814,
           2099916-2099967,2100100-2100164,2100238-2100321,
           2101144-2101191,2101272-2101392,2101809-2101911,
           2102456-2102537,2102670-2102717,2102993-2103129,
           2103225-2103313,2104206-2104327
          Length = 345

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +3

Query: 408 DAVARDHGFVNLGKIFDDHYHFHHRSLTKRS 500
           DA A     VN G + DD+ HF  R  TKR+
Sbjct: 35  DAAASKLSCVNKGYMKDDYVHFFVRRTTKRA 65


>03_03_0094 + 14378953-14380728
          Length = 591

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +3

Query: 354 GHYTPTWAVHIPEGREVADAVARDHGFVNLGK 449
           GHYTP  A H P  R +A+ +   +G +NL K
Sbjct: 85  GHYTPLPAGHSPLKRPIAEYLR--YGVINLDK 114


>03_02_0400 -
           8135283-8135490,8136047-8136213,8136289-8136477,
           8136560-8136655,8136746-8136874,8136947-8137123,
           8137256-8137366,8138592-8138792,8139022-8139186,
           8139293-8139527,8139618-8139745,8139833-8139928,
           8140017-8140112,8140252-8140325,8140393-8140462,
           8140556-8140665,8140753-8140906,8141040-8141155,
           8141259-8141379,8141464-8141641,8142331-8142489,
           8142619-8142732,8142821-8143000,8143098-8143177
          Length = 1117

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +2

Query: 17  RDRVIHAPFDSRTVFLAVSVYCKTSQCRVVVLSDNAYISKI 139
           + R+   P D   V+  + +  ++SQCR + L+DN   SKI
Sbjct: 721 KPRIADEPLDKSKVWKLMEI-TESSQCRSLKLTDNMRTSKI 760


>12_01_0407 - 3219980-3221278
          Length = 432

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 432 FVNLGKIFDDHYHFHHRSLTKRSLT 506
           F  LGK+ D H+H HHR   K  ++
Sbjct: 56  FGELGKV-DHHHHHHHRQHAKNGMS 79


>10_08_0899 -
           21430516-21430652,21431399-21431462,21432136-21432164,
           21433165-21433378
          Length = 147

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +2

Query: 491 EEIPHAAHEHHGRLEGDSRV 550
           E   H AH  HGRL GD+R+
Sbjct: 110 ESEAHTAHAPHGRLVGDTRL 129


>03_01_0206 -
           1625020-1625619,1625722-1625931,1626054-1626094,
           1626185-1626234,1626345-1626433,1626534-1626608,
           1626721-1626806,1626896-1626956,1627090-1627206,
           1627308-1627549,1627983-1628040,1628162-1628284
          Length = 583

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +3

Query: 363 TPTWAVHIPEGREVADAVARDHGFVNLGKIF 455
           TPTWAV +     V  +VA +HG   LG  F
Sbjct: 13  TPTWAVAVVCAVIVLVSVAMEHGLHKLGHWF 43


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,347,999
Number of Sequences: 37544
Number of extensions: 339234
Number of successful extensions: 949
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 948
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)