Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0498
         (590 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   1.7  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   3.9  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   9.0  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -1

Query: 578 TGFFVVQPIVPCYHLLI 528
           TG+F++Q  VPC  +++
Sbjct: 244 TGYFLIQVYVPCVLIVV 260


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -3

Query: 321 PGSRVREHRAPSHGHTHQLVLITLHIHKTV*VD 223
           PG+ VR    P H H  + + I+ + H  V +D
Sbjct: 531 PGAVVRVFLGPKHDHQGRPISISKNQHLFVELD 563


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 5/13 (38%), Positives = 8/13 (61%)
 Frame = +3

Query: 450 IFDDHYHFHHRSL 488
           I+  H+H HH  +
Sbjct: 69  IYQSHHHLHHHQV 81


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,197
Number of Sequences: 438
Number of extensions: 3584
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17237673
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)