Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0498
         (590 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g29680.1 68417.m04228 type I phosphodiesterase/nucleotide pyr...    31   0.76 
At3g11402.1 68416.m01388 DC1 domain-containing protein contains ...    30   1.0  
At5g53110.1 68418.m06599 expressed protein                             28   5.4  
At3g52370.1 68416.m05756 beta-Ig-H3 domain-containing protein / ...    27   7.1  
At2g23950.1 68415.m02860 leucine-rich repeat family protein / pr...    27   9.4  
At2g05160.1 68415.m00543 zinc finger (CCCH-type) family protein ...    27   9.4  

>At4g29680.1 68417.m04228 type I phosphodiesterase/nucleotide
           pyrophosphatase family protein similar to SP|P06802
           Ectonucleotide pyrophosphatase/phosphodiesterase 1
           (Plasma-cell membrane glycoprotein PC-1) [Includes:
           Alkaline phosphodiesterase I (EC 3.1.4.1); Nucleotide
           pyrophosphatase (EC 3.6.1.9) {Mus musculus}; contains
           Pfam profile PF01663: Type I phosphodiesterase /
           nucleotide pyrophosphatase
          Length = 496

 Score = 30.7 bits (66), Expect = 0.76
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +3

Query: 357 HYTPTWAVHIPEGREVADAVARDHGFVNLGKIFDDHY 467
           +YTP  A+  P G + AD VA+ +  ++ GK+ +  Y
Sbjct: 348 YYTPLLAIQPPSGHDAADIVAKINEGLSSGKVENGKY 384


>At3g11402.1 68416.m01388 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 708

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = +2

Query: 449 DIRRSLPFSSSFTNEEIPHAAHEHH-GRLEGDSRVRWAEQQ 568
           +I   +PF    +N+ I H +HEHH  +LE   RVR AE+Q
Sbjct: 393 NIEDIVPFEK-VSNDMIKHFSHEHHLLKLEKYDRVRDAEKQ 432


>At5g53110.1 68418.m06599 expressed protein
          Length = 240

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = +2

Query: 461 SLPFSSSFTNEEIPHAAHE 517
           +LPFS +FT EEI +AA E
Sbjct: 77  TLPFSGNFTVEEIDYAAQE 95


>At3g52370.1 68416.m05756 beta-Ig-H3 domain-containing protein /
           fasciclin domain-containing protein weak similarity to
           osteoblast specific factor 2 [Homo sapiens] GI:393319;
           contains Pfam profile PF02469: Fasciclin domain;
           supporting cDNA gi|26450295|dbj|AK117608.1|
          Length = 436

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +3

Query: 456 DDHYHFHHRSLTKRSLTPPTSITAD*KVIAGYDGLNNKKSCQE 584
           +DH HF +  +    +T P  +T    +I G + L   +S QE
Sbjct: 130 NDHLHFTNGKVNSAEITKPDDLTRPDGIIHGIERLLIPRSVQE 172


>At2g23950.1 68415.m02860 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 634

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +3

Query: 381 HIPEGREVADAVARDHGFVNLGKIFDDHYHFHHRSLTKRSLT 506
           H P+  EV   +  D G         DH HF+H +++ R++T
Sbjct: 557 HRPKMSEVVQMLEGD-GLAERWAASHDHSHFYHANMSYRTIT 597


>At2g05160.1 68415.m00543 zinc finger (CCCH-type) family protein /
           RNA recognition motif (RRM)-containing protein contains
           InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 536

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -3

Query: 381 GRPMLACNALVLFQCATEPTPGSRVREHRAPSHG 280
           G P   CNA VL +   E +  SR  ++  P HG
Sbjct: 375 GNPHFICNARVLVKPYREKSRSSRYLDNYKPLHG 408


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,951,680
Number of Sequences: 28952
Number of extensions: 262591
Number of successful extensions: 744
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1171109464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)