BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0498 (590 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At4g29680.1 68417.m04228 type I phosphodiesterase/nucleotide pyr... 31 0.76 At3g11402.1 68416.m01388 DC1 domain-containing protein contains ... 30 1.0 At5g53110.1 68418.m06599 expressed protein 28 5.4 At3g52370.1 68416.m05756 beta-Ig-H3 domain-containing protein / ... 27 7.1 At2g23950.1 68415.m02860 leucine-rich repeat family protein / pr... 27 9.4 At2g05160.1 68415.m00543 zinc finger (CCCH-type) family protein ... 27 9.4 >At4g29680.1 68417.m04228 type I phosphodiesterase/nucleotide pyrophosphatase family protein similar to SP|P06802 Ectonucleotide pyrophosphatase/phosphodiesterase 1 (Plasma-cell membrane glycoprotein PC-1) [Includes: Alkaline phosphodiesterase I (EC 3.1.4.1); Nucleotide pyrophosphatase (EC 3.6.1.9) {Mus musculus}; contains Pfam profile PF01663: Type I phosphodiesterase / nucleotide pyrophosphatase Length = 496 Score = 30.7 bits (66), Expect = 0.76 Identities = 13/37 (35%), Positives = 22/37 (59%) Frame = +3 Query: 357 HYTPTWAVHIPEGREVADAVARDHGFVNLGKIFDDHY 467 +YTP A+ P G + AD VA+ + ++ GK+ + Y Sbjct: 348 YYTPLLAIQPPSGHDAADIVAKINEGLSSGKVENGKY 384 >At3g11402.1 68416.m01388 DC1 domain-containing protein contains Pfam profile PF03107: DC1 domain Length = 708 Score = 30.3 bits (65), Expect = 1.0 Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 1/41 (2%) Frame = +2 Query: 449 DIRRSLPFSSSFTNEEIPHAAHEHH-GRLEGDSRVRWAEQQ 568 +I +PF +N+ I H +HEHH +LE RVR AE+Q Sbjct: 393 NIEDIVPFEK-VSNDMIKHFSHEHHLLKLEKYDRVRDAEKQ 432 >At5g53110.1 68418.m06599 expressed protein Length = 240 Score = 27.9 bits (59), Expect = 5.4 Identities = 12/19 (63%), Positives = 15/19 (78%) Frame = +2 Query: 461 SLPFSSSFTNEEIPHAAHE 517 +LPFS +FT EEI +AA E Sbjct: 77 TLPFSGNFTVEEIDYAAQE 95 >At3g52370.1 68416.m05756 beta-Ig-H3 domain-containing protein / fasciclin domain-containing protein weak similarity to osteoblast specific factor 2 [Homo sapiens] GI:393319; contains Pfam profile PF02469: Fasciclin domain; supporting cDNA gi|26450295|dbj|AK117608.1| Length = 436 Score = 27.5 bits (58), Expect = 7.1 Identities = 13/43 (30%), Positives = 21/43 (48%) Frame = +3 Query: 456 DDHYHFHHRSLTKRSLTPPTSITAD*KVIAGYDGLNNKKSCQE 584 +DH HF + + +T P +T +I G + L +S QE Sbjct: 130 NDHLHFTNGKVNSAEITKPDDLTRPDGIIHGIERLLIPRSVQE 172 >At2g23950.1 68415.m02860 leucine-rich repeat family protein / protein kinase family protein contains Pfam domains PF00560: Leucine Rich Repeat and PF00069: Protein kinase domain Length = 634 Score = 27.1 bits (57), Expect = 9.4 Identities = 13/42 (30%), Positives = 21/42 (50%) Frame = +3 Query: 381 HIPEGREVADAVARDHGFVNLGKIFDDHYHFHHRSLTKRSLT 506 H P+ EV + D G DH HF+H +++ R++T Sbjct: 557 HRPKMSEVVQMLEGD-GLAERWAASHDHSHFYHANMSYRTIT 597 >At2g05160.1 68415.m00543 zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 536 Score = 27.1 bits (57), Expect = 9.4 Identities = 13/34 (38%), Positives = 17/34 (50%) Frame = -3 Query: 381 GRPMLACNALVLFQCATEPTPGSRVREHRAPSHG 280 G P CNA VL + E + SR ++ P HG Sbjct: 375 GNPHFICNARVLVKPYREKSRSSRYLDNYKPLHG 408 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,951,680 Number of Sequences: 28952 Number of extensions: 262591 Number of successful extensions: 744 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 734 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 740 length of database: 12,070,560 effective HSP length: 77 effective length of database: 9,841,256 effective search space used: 1171109464 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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