Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0497
(664 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1296.05c |||cyclin L family cyclin|Schizosaccharomyces pombe... 59 5e-10
SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr 2|... 38 0.001
SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual 36 0.004
SPBC18H10.11c |||conserved fungal protein|Schizosaccharomyces po... 28 1.0
SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA syntheta... 27 2.4
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos... 27 2.4
SPCC1672.09 |||triglyceride lipase-cholesterol esterase |Schizos... 27 2.4
SPCC1235.03 |||SMR and CUE domain protein|Schizosaccharomyces po... 27 3.2
SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces p... 26 4.2
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo... 26 4.2
SPBC577.05c |rec27|mug41|meiotic recombination protein Rec27|Sch... 26 4.2
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 26 5.6
SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera... 26 5.6
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 25 7.4
SPBC3D6.07 |gpi3||pig-A|Schizosaccharomyces pombe|chr 2|||Manual 25 7.4
SPCC1827.02c |||cholinephosphate cytidylyltransferase |Schizosac... 25 7.4
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 25 7.4
SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like |Schizosacch... 25 9.7
>SPAC1296.05c |||cyclin L family cyclin|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 258
Score = 59.3 bits (137), Expect = 5e-10
Identities = 27/73 (36%), Positives = 43/73 (58%)
Frame = +2
Query: 38 AQKTISPMLVDQNYIELKNQVIKAERRILKELGFCVHVKHPHKLIVVYLQLLQYEKNRQL 217
A+ I+ L + +N++ E +L+ L F H+ PHKL + YLQ LQ N++L
Sbjct: 112 ARGFIAHDLYSEEMYSSRNRLSNMELEVLRALNFDTHIVIPHKLAIHYLQTLQLIDNKKL 171
Query: 218 MQMAWNYMNDALR 256
+Q+ WN++NDA R
Sbjct: 172 LQITWNFLNDASR 184
Score = 47.6 bits (108), Expect = 2e-06
Identities = 20/63 (31%), Positives = 39/63 (61%)
Frame = +1
Query: 250 SKTDVFMRFPPETIACACIYLTARKIGLPLPNNPHWFLLFKVTEDDIREVSMRILQLYKR 429
S+T + + +PP ++AC CI + AR IG+ LP + W+ +F T+++I ++ + YK
Sbjct: 183 SRTRLCVLYPPFSLACGCIAMAARVIGMKLPKD--WYRVFDTTKEEIDSLTSILENFYKT 240
Query: 430 AKV 438
+ +
Sbjct: 241 SAI 243
>SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 342
Score = 38.3 bits (85), Expect = 0.001
Identities = 26/99 (26%), Positives = 53/99 (53%), Gaps = 3/99 (3%)
Frame = +2
Query: 38 AQKTISPMLVDQN---YIELKNQVIKAERRILKELGFCVHVKHPHKLIVVYLQLLQYEKN 208
AQK S +LVD+ Y ++ ++ E +L+ L F V+HP+ ++ +++ + +
Sbjct: 118 AQKN-SNVLVDEQTKEYWRWRDVILYTEEVLLEALCFDFTVEHPYPYVLSFIKKFVAD-D 175
Query: 209 RQLMQMAWNYMNDALRQMSL*DFLLKPLHVLAFT*RPEK 325
+ + ++AW Y+ND+ R ++ + K + AF EK
Sbjct: 176 KNVTKVAWTYINDSTRSIACLLYSPKTIAAAAFQFALEK 214
Score = 27.1 bits (57), Expect = 2.4
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Frame = +1
Query: 274 FPPETIACACIYLTARKIGLPLPNN----PHWFLLFKVTEDDIREVSMRILQLYKRAKVN 441
+ P+TIA A K + L P W +V+ +D++ V I LYK K+N
Sbjct: 198 YSPKTIAAAAFQFALEKNEINLSTTTDGLPVWMEESQVSYEDVKGVLTLIDSLYK--KIN 255
Query: 442 PEE 450
P +
Sbjct: 256 PSK 258
>SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 325
Score = 36.3 bits (80), Expect = 0.004
Identities = 19/72 (26%), Positives = 38/72 (52%)
Frame = +2
Query: 89 KNQVIKAERRILKELGFCVHVKHPHKLIVVYLQLLQYEKNRQLMQMAWNYMNDALRQMSL 268
+ +++ ER L+ + F V+HPH +V + + L++ + +AWN DA + ++
Sbjct: 123 QKRILGLERMTLELICFDFRVRHPHNYMVKFAKSLKFSSS--TASIAWNVCTDAYKTYTM 180
Query: 269 *DFLLKPLHVLA 304
L P H++A
Sbjct: 181 ---LKYPAHIVA 189
>SPBC18H10.11c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 432
Score = 28.3 bits (60), Expect = 1.0
Identities = 17/77 (22%), Positives = 36/77 (46%)
Frame = +2
Query: 17 HHIKQVRAQKTISPMLVDQNYIELKNQVIKAERRILKELGFCVHVKHPHKLIVVYLQLLQ 196
+++ + R +KT S ++ + + KN ++ L++ ++ + K V Y +LQ
Sbjct: 58 NNLNEFRNKKTKSSLIRNDGFKLAKNVSSLLQKESLEKALHLLYERSNAKKTVAYNLVLQ 117
Query: 197 YEKNRQLMQMAWNYMND 247
Y + AW+ ND
Sbjct: 118 YHLAKGHYNAAWSLYND 134
>SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA synthetases
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 450
Score = 27.1 bits (57), Expect = 2.4
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +1
Query: 490 ANKHSQE*KIKKLRTKKRNPKSPTASTSKDTRRDTKKEKSPKTPP 624
A+ S E K L K+ ++ K ++D KKEK+PK PP
Sbjct: 229 ASVKSVEKAPKGLEGAKKEKQNKKEKKDKKDKKD-KKEKAPKEPP 272
>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 601
Score = 27.1 bits (57), Expect = 2.4
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = +1
Query: 475 RKIYIANKHSQE*KIKKL--RTKKRNPKSPTASTSKDTRR 588
RK+++ HS K L RTK + SP ASTS R
Sbjct: 118 RKLFLDENHSTNSKPPSLPPRTKSSSQSSPMASTSTSKSR 157
>SPCC1672.09 |||triglyceride lipase-cholesterol esterase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 467
Score = 27.1 bits (57), Expect = 2.4
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = +2
Query: 17 HHIKQVRAQKTISPMLVDQNYIELKNQVIKAERRILKELGFCVHVKHPHKLIVVY 181
H +R IS V+ + + ++ I RI K+ + HP KL VVY
Sbjct: 76 HDAADIREMCKISGYYVEDHLVRTEDDYILCIHRISKDSPGRIGSPHPKKLPVVY 130
>SPCC1235.03 |||SMR and CUE domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 399
Score = 26.6 bits (56), Expect = 3.2
Identities = 17/58 (29%), Positives = 25/58 (43%)
Frame = +1
Query: 418 LYKRAKVNPEELETKVENLRKIYIANKHSQE*KIKKLRTKKRNPKSPTASTSKDTRRD 591
L RA E++ET + L I ++ Q K K T R P S S +++ D
Sbjct: 29 LNHRAIQESEQIETAADALITSNIGHRSRQRKKKTKKATNSRKPLSKFQSNTEEVNED 86
>SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 612
Score = 26.2 bits (55), Expect = 4.2
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Frame = +2
Query: 23 IKQVRAQKTISPMLVDQNYIELKNQVIK---AERRILKELGFCVHVKH 157
I+ R + +S +++D +Y+E+KN I R+ K GF H
Sbjct: 42 IQSARVSQALSHIILDTSYLEIKNVTINDIPTPFRVDKRRGFLGSALH 89
>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 26.2 bits (55), Expect = 4.2
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +1
Query: 445 EELETKVENLRKIYIANKHSQE*KIKKLRTKKRNPKSPTASTSK 576
+EL ++E + + + K SQ K ++ +KR PKS T K
Sbjct: 510 KELAKEIEMRKSLELKLKLSQSNKAGPVKHRKRRPKSKRRITGK 553
>SPBC577.05c |rec27|mug41|meiotic recombination protein
Rec27|Schizosaccharomyces pombe|chr 2|||Manual
Length = 134
Score = 26.2 bits (55), Expect = 4.2
Identities = 15/60 (25%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = +1
Query: 370 KVTEDDIREVSMR-ILQLYKRAKVNPEELETKVENLRKIYIANKHSQE*KIKKLRTKKRN 546
++ E + E++++ I + K+ E +T +EN +K +I + + KIK+ +K N
Sbjct: 25 EIIEHVLEELNLKNIERRVKKYDQIESEYKTNIENEKKAFIKDVSQVQQKIKEFEIQKAN 84
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 25.8 bits (54), Expect = 5.6
Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Frame = +2
Query: 62 LVDQNYIELKNQVIKAERRILKELGFCVHVKHPHKLIVV-YLQLLQYEKNRQLMQMAWN 235
+ D YI++ Q + R+ K+ G C+ ++H L + Y R + +A N
Sbjct: 471 MFDMQYIDIAEQALGVLERLSKDFGICI-LEHRGMLAALQYFDFFYTTVQRTAISLAAN 528
>SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans
isomerase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 361
Score = 25.8 bits (54), Expect = 5.6
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +1
Query: 514 KIKKLRTKKRNPKSPTASTSKDTRRDTKKEKSPKTP 621
++KK RTK + + AS K+ +TKK+K TP
Sbjct: 182 QVKKKRTKDESEQEEAASPKKN---NTKKQKVEGTP 214
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 25.4 bits (53), Expect = 7.4
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +1
Query: 538 KRNPKSPTASTSKDTRRDTKKEKSPKTPPL 627
+ N +A S RRD K+EK PP+
Sbjct: 961 RHNDSDASAYVSSARRRDFKEEKIESAPPI 990
>SPBC3D6.07 |gpi3||pig-A|Schizosaccharomyces pombe|chr 2|||Manual
Length = 456
Score = 25.4 bits (53), Expect = 7.4
Identities = 15/75 (20%), Positives = 30/75 (40%)
Frame = +1
Query: 250 SKTDVFMRFPPETIACACIYLTARKIGLPLPNNPHWFLLFKVTEDDIREVSMRILQLYKR 429
S T+ F E +C ++ + G+P H + EDD+ + ++ Y
Sbjct: 274 SLTEAFGTVLVEAASCGLYVISTKVGGVPEVLPSHMTRFARPEEDDLADTLSSVITDYLD 333
Query: 430 AKVNPEELETKVENL 474
K+ E +V+ +
Sbjct: 334 HKIKTETFHEEVKQM 348
>SPCC1827.02c |||cholinephosphate cytidylyltransferase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 354
Score = 25.4 bits (53), Expect = 7.4
Identities = 18/66 (27%), Positives = 29/66 (43%)
Frame = +1
Query: 418 LYKRAKVNPEELETKVENLRKIYIANKHSQE*KIKKLRTKKRNPKSPTASTSKDTRRDTK 597
L K +V P E E VE K Y E + KK + +SP+ S + ++ +
Sbjct: 5 LAKMYEVEPSEKEDNVERQTKKYNFEIDEPEEQEKKDEKEDDKEESPSKSLEEISQSVSP 64
Query: 598 KEKSPK 615
E+ P+
Sbjct: 65 VEEEPR 70
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 25.4 bits (53), Expect = 7.4
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +2
Query: 275 FLLKPLH-VLAFT*RPEK*VCRCPITHTGSFYSKLQKMISGKS 400
FLL P+ L F E + I+HTGSF++ L + S S
Sbjct: 15 FLLIPISSALPFQTFEESLKLKSNISHTGSFFANLSQSYSSTS 57
>SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1030
Score = 25.0 bits (52), Expect = 9.7
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +2
Query: 32 VRAQ-KTISPMLVDQNYIELKNQVIKAERRILKELGFC 142
+RAQ K IS + + I ++ + +K +R+L+ LGFC
Sbjct: 815 LRAQIKDISTKITNTEAI-IQLRELKIRQRVLRRLGFC 851
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,631,232
Number of Sequences: 5004
Number of extensions: 52002
Number of successful extensions: 185
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -