Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0497
(664 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_59567| Best HMM Match : Cyclin_N (HMM E-Value=3.3e-07) 39 0.004
SB_45217| Best HMM Match : Linker_histone (HMM E-Value=4.4e-27) 38 0.007
SB_28497| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.21
SB_15826| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.21
SB_13359| Best HMM Match : DMAP1 (HMM E-Value=0) 33 0.27
SB_2413| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_36680| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_47526| Best HMM Match : Churchill (HMM E-Value=0.52) 29 3.4
SB_46961| Best HMM Match : DUF663 (HMM E-Value=0) 29 3.4
SB_6245| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_46755| Best HMM Match : zf-C2H2 (HMM E-Value=1.09301e-43) 29 4.5
SB_39987| Best HMM Match : FtsL (HMM E-Value=0.4) 29 4.5
SB_23319| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_14000| Best HMM Match : DUF1213 (HMM E-Value=0.71) 28 5.9
SB_32504| Best HMM Match : TolA (HMM E-Value=0.52) 28 5.9
SB_17350| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18) 28 7.8
SB_19489| Best HMM Match : TP2 (HMM E-Value=0.58) 28 7.8
SB_10637| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.8
SB_385| Best HMM Match : SRP54_N (HMM E-Value=1.1) 28 7.8
SB_159| Best HMM Match : TP2 (HMM E-Value=0.58) 28 7.8
SB_6719| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.8
>SB_59567| Best HMM Match : Cyclin_N (HMM E-Value=3.3e-07)
Length = 282
Score = 38.7 bits (86), Expect = 0.004
Identities = 22/71 (30%), Positives = 41/71 (57%)
Frame = +2
Query: 92 NQVIKAERRILKELGFCVHVKHPHKLIVVYLQLLQYEKNRQLMQMAWNYMNDALRQMSL* 271
NQV++ E +L+ L C+ + HP++ + Y+ L E+ ++ AW +ND+LR
Sbjct: 134 NQVLECEFYLLEMLDCCLIIYHPYRPLTQYVSDLGMEE--AILPTAWRIINDSLRTDI-- 189
Query: 272 DFLLKPLHVLA 304
FL+ P +++A
Sbjct: 190 -FLIYPPYLIA 199
Score = 38.7 bits (86), Expect = 0.004
Identities = 22/70 (31%), Positives = 37/70 (52%)
Frame = +1
Query: 253 KTDVFMRFPPETIACACIYLTARKIGLPLPNNPHWFLLFKVTEDDIREVSMRILQLYKRA 432
+TD+F+ +PP IA A I++ + ++ WF V D I E++ IL+LY+
Sbjct: 186 RTDIFLIYPPYLIALAAIHMAC---VIQQKDSKQWFAELSVDMDQIVEITHHILRLYEIW 242
Query: 433 KVNPEELETK 462
K E+ E +
Sbjct: 243 KNFEEKQEIR 252
>SB_45217| Best HMM Match : Linker_histone (HMM E-Value=4.4e-27)
Length = 228
Score = 37.9 bits (84), Expect = 0.007
Identities = 23/85 (27%), Positives = 37/85 (43%)
Frame = +1
Query: 367 FKVTEDDIREVSMRILQLYKRAKVNPEELETKVENLRKIYIANKHSQE*KIKKLRTKKRN 546
FK+++D +E M + + + ++LE + K+ K K KK +
Sbjct: 82 FKLSQDTKKEGEMAEKKAKAKERKLQKQLEKEAAEEEKVKKPKKSRDGEKTKKSKKVTSE 141
Query: 547 PKSPTASTSKDTRRDTKKEKSPKTP 621
PKSP SKD T K+ K+P
Sbjct: 142 PKSPKVKKSKDKSTKTTKKSDAKSP 166
>SB_28497| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 292
Score = 33.1 bits (72), Expect = 0.21
Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Frame = +1
Query: 406 RILQLYKRAKVNPEELETKVENLRKIYIANKHSQE*K--IKKLRTKKRNPKSPTASTSKD 579
++L+LY R + +E E + LRKI + K ++ + ++KL T N + +K+
Sbjct: 180 QLLKLYNRTQEQVQEEEMLMAELRKIEMRKKEREKKQQDLQKLITAAENSAEYRQNLAKE 239
Query: 580 TRRDTKKEKSP 612
+ ++EK+P
Sbjct: 240 KTNNFRREKNP 250
>SB_15826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 325
Score = 33.1 bits (72), Expect = 0.21
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = +1
Query: 451 LETKVENLRKIYIANKHSQE*KIKKLRTKKRNPKSPTASTSKDTRRDTK 597
L+TK+ ++ + + K SQ + KK + KK+ P TS TR+D+K
Sbjct: 28 LQTKMADVTRSLPSEKSSQN-QAKKRKKKKQKTHRPVTETSPSTRKDSK 75
>SB_13359| Best HMM Match : DMAP1 (HMM E-Value=0)
Length = 535
Score = 32.7 bits (71), Expect = 0.27
Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Frame = +1
Query: 406 RILQLYKRAKVNPEELETKVENLRKIYIANKHSQE*K--IKKLRTKKRNPKSPTASTSKD 579
++L+LY R + +E E + LRKI + K ++ + ++KL T N + +K+
Sbjct: 303 QLLKLYNRTQEQVQEEEMLMAELRKIEMRKKEREKKQQDLQKLITAAENSAEYRQNLAKE 362
Query: 580 TRRDTKKEKSP 612
+ ++EK P
Sbjct: 363 KTNNFRREKKP 373
>SB_2413| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 493
Score = 30.7 bits (66), Expect = 1.1
Identities = 20/56 (35%), Positives = 30/56 (53%)
Frame = +1
Query: 451 LETKVENLRKIYIANKHSQE*KIKKLRTKKRNPKSPTASTSKDTRRDTKKEKSPKT 618
L+ VEN+ + AN+ E + K R +K P +P +K +RD KK+KS T
Sbjct: 45 LKDLVENIPDLP-ANEEEGEGEPKPKR-RKAQPSAPKEKQTKSRKRDKKKDKSALT 98
>SB_36680| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 326
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/68 (25%), Positives = 31/68 (45%)
Frame = +1
Query: 412 LQLYKRAKVNPEELETKVENLRKIYIANKHSQE*KIKKLRTKKRNPKSPTASTSKDTRRD 591
+ ++ K ++ ETK + + I + KK + K + PK+ + KD +
Sbjct: 126 VSVFDCVKEETQDEETKQDQACIMAIEEMFPPVRQKKKAKRKNQRPKASQCRSRKDIKEC 185
Query: 592 TKKEKSPK 615
TKKE P+
Sbjct: 186 TKKEDEPE 193
>SB_47526| Best HMM Match : Churchill (HMM E-Value=0.52)
Length = 890
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +1
Query: 388 IREVSMRILQLYKRAKVNPEELETKVENLRKIYIANKHS 504
+ V ++ LY RAK +P LET + + +YI K+S
Sbjct: 183 LETVQQKMTLLYLRAKNSPHILETDQQEMTLLYIRAKNS 221
Score = 29.1 bits (62), Expect = 3.4
Identities = 19/54 (35%), Positives = 31/54 (57%)
Frame = +1
Query: 343 NNPHWFLLFKVTEDDIREVSMRILQLYKRAKVNPEELETKVENLRKIYIANKHS 504
N+PH + E D +E+++ LY RAK +P +LET + + +YI K+S
Sbjct: 199 NSPH------ILETDQQEMTL----LYIRAKNSPHKLETVQQEMTLLYIRAKNS 242
Score = 29.1 bits (62), Expect = 3.4
Identities = 19/54 (35%), Positives = 31/54 (57%)
Frame = +1
Query: 343 NNPHWFLLFKVTEDDIREVSMRILQLYKRAKVNPEELETKVENLRKIYIANKHS 504
N+PH + E D +E+++ LY RAK +P +LET + + +YI K+S
Sbjct: 409 NSPH------ILETDQQEMTL----LYIRAKNSPHKLETVQQEMTLLYIRAKNS 452
Score = 29.1 bits (62), Expect = 3.4
Identities = 19/54 (35%), Positives = 31/54 (57%)
Frame = +1
Query: 343 NNPHWFLLFKVTEDDIREVSMRILQLYKRAKVNPEELETKVENLRKIYIANKHS 504
N+PH + E D +E+++ LY RAK +P +LET + + +YI K+S
Sbjct: 829 NSPH------ILETDQQEMTL----LYIRAKNSPHKLETVQQEMTLLYIRAKNS 872
>SB_46961| Best HMM Match : DUF663 (HMM E-Value=0)
Length = 491
Score = 29.1 bits (62), Expect = 3.4
Identities = 27/102 (26%), Positives = 48/102 (47%), Gaps = 1/102 (0%)
Frame = +1
Query: 313 TARKIGLPLPNNPHWFLLFKVTEDDIREVSMRILQLYKRAKVNPEELETKVENL-RKIYI 489
T R L +P L FK D ++ L+ + + P+E KV +L +++Y
Sbjct: 375 TRRFNPLVIPKKLQKDLPFKSKPKDAKKRQRPSLESKRAVVMEPQE--KKVYSLMQQLYT 432
Query: 490 ANKHSQE*KIKKLRTKKRNPKSPTASTSKDTRRDTKKEKSPK 615
ANK + +KL K++ ++ A D++R TK+ + K
Sbjct: 433 ANKEKLRKRKEKLVQKRKVHRAEQAKI--DSKRQTKRREERK 472
>SB_6245| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1000
Score = 29.1 bits (62), Expect = 3.4
Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Frame = +1
Query: 394 EVSMRILQLYKRAK-VNPEELETKVENLRKIYIANKHSQE*KIKKLRTKKRNPKSPTAST 570
+V R+ + + +K + PEE + +++ KI IA + + ++KKL K N + PT+ T
Sbjct: 205 DVRSRLESVQEESKELTPEEQQERIK-AEKIRIALEKLRAARVKKLVVKVYNDEDPTSKT 263
>SB_46755| Best HMM Match : zf-C2H2 (HMM E-Value=1.09301e-43)
Length = 1806
Score = 28.7 bits (61), Expect = 4.5
Identities = 21/67 (31%), Positives = 32/67 (47%)
Frame = +1
Query: 379 EDDIREVSMRILQLYKRAKVNPEELETKVENLRKIYIANKHSQE*KIKKLRTKKRNPKSP 558
E ++ + R + +RA+ PEE +T LRK E K K+ RT +R KSP
Sbjct: 1477 ETEVPDNGGRETRSKRRAQNAPEEDKTVKRTLRKRTSEPTKQYEPKTKQTRTSRR-AKSP 1535
Query: 559 TASTSKD 579
+ K+
Sbjct: 1536 AGAEKKN 1542
>SB_39987| Best HMM Match : FtsL (HMM E-Value=0.4)
Length = 573
Score = 28.7 bits (61), Expect = 4.5
Identities = 20/86 (23%), Positives = 39/86 (45%)
Frame = +1
Query: 355 WFLLFKVTEDDIREVSMRILQLYKRAKVNPEELETKVENLRKIYIANKHSQE*KIKKLRT 534
W + K + + V R+L + KV+P + E +++ K A S
Sbjct: 297 WRNVVKRVFESTKAVPSRVLMRLRHQKVDPSQEELVAKSVTKPGTARMPS--------TA 348
Query: 535 KKRNPKSPTASTSKDTRRDTKKEKSP 612
++RN ++ + +T+ + DT KE +P
Sbjct: 349 RQRNQQTQSRATAGGIKMDTPKENTP 374
>SB_23319| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 310
Score = 28.3 bits (60), Expect = 5.9
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Frame = +1
Query: 445 EELETKVENLRKIYIANKHSQE*KIKKL-----RTKKRNPKSPTASTSKDTRRDTKKEKS 609
E + + +++R+I K QE + K++ KK+ K +A + + +TKK K
Sbjct: 72 ESMNYEEDDVRRILEDLKVEQEEQKKRMARELEEAKKKVAKEKSAKPKESKKPETKKPKK 131
Query: 610 PKTPP 624
P T P
Sbjct: 132 PDTAP 136
>SB_14000| Best HMM Match : DUF1213 (HMM E-Value=0.71)
Length = 1281
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 529 RTKKRNPKSPTASTSKDTRRDTKKEKSPK 615
+TK+ P+ A+ K RR TKK K+ K
Sbjct: 211 KTKRSKPQDKQAARPKQPRRKTKKSKTSK 239
>SB_32504| Best HMM Match : TolA (HMM E-Value=0.52)
Length = 422
Score = 28.3 bits (60), Expect = 5.9
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Frame = +1
Query: 424 KRAKVNPEELETKVENLRKIYIANKHSQE*KIKKLRTKKRNPKS-PTASTSKDTRRDTKK 600
K K E+ K E K K +E + +K +TKK +S T K+ + +K
Sbjct: 134 KEEKKEKEKERMKKEEKHKEK-TRKEEKEREKEKEKTKKEEKESREKEKTKKEEKESKEK 192
Query: 601 EKSPKTPP 624
+K K PP
Sbjct: 193 DKQKKDPP 200
>SB_17350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2956
Score = 28.3 bits (60), Expect = 5.9
Identities = 24/89 (26%), Positives = 36/89 (40%), Gaps = 3/89 (3%)
Frame = +1
Query: 361 LLFKVTEDDIREVSMRILQLYKRAKVNPEE--LETKVENLRKIY-IANKHSQE*KIKKLR 531
L++K E+ + E + LY V ++ E EN+ I I H +E K +
Sbjct: 161 LVYKAVEELVNEELRKQNHLYVNVSVGDQQGGEEQNYENVAFIRSIQRLHLEEKKASRPP 220
Query: 532 TKKRNPKSPTASTSKDTRRDTKKEKSPKT 618
+ P P +TSK E PKT
Sbjct: 221 ENRPIPTPPRETTSKTQEPKNVMELPPKT 249
>SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18)
Length = 765
Score = 27.9 bits (59), Expect = 7.8
Identities = 18/56 (32%), Positives = 30/56 (53%)
Frame = +1
Query: 451 LETKVENLRKIYIANKHSQE*KIKKLRTKKRNPKSPTASTSKDTRRDTKKEKSPKT 618
LE+KV++ K S+ K K + K R+ +S + ++DT +D K +SP T
Sbjct: 153 LESKVQSNEKDTDEKLSSKLLKCLKDKHKSRS-RSNSKDKAQDTEKDRKSSRSPST 207
>SB_19489| Best HMM Match : TP2 (HMM E-Value=0.58)
Length = 429
Score = 27.9 bits (59), Expect = 7.8
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +1
Query: 520 KKLRTKKRNPKSPTASTSKDTRRDTKKEKSPKT 618
+K T+ +N PT S S D+RR TK S T
Sbjct: 138 QKQSTESKNIPGPTNSISSDSRRITKTTNSNST 170
>SB_10637| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 200
Score = 27.9 bits (59), Expect = 7.8
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = -2
Query: 384 IFCNFE*KEPV--WVIGQRQTYFSGRQVNASTCNGFRR 277
IF FE E V W G R+T+F V+A+ FRR
Sbjct: 19 IFQRFETFESVLVWTAGSRRTHFENDNVDANQVMRFRR 56
>SB_385| Best HMM Match : SRP54_N (HMM E-Value=1.1)
Length = 210
Score = 27.9 bits (59), Expect = 7.8
Identities = 20/61 (32%), Positives = 29/61 (47%)
Frame = +1
Query: 442 PEELETKVENLRKIYIANKHSQE*KIKKLRTKKRNPKSPTASTSKDTRRDTKKEKSPKTP 621
P + + K E+ K +K S+ K TKK + KSP S T + T +K+PK
Sbjct: 65 PPKKKKKAESKPKSAEKSKSSKSKTPAKKETKKESKKSPKKS-KPVTVKITSGKKTPKKS 123
Query: 622 P 624
P
Sbjct: 124 P 124
>SB_159| Best HMM Match : TP2 (HMM E-Value=0.58)
Length = 429
Score = 27.9 bits (59), Expect = 7.8
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +1
Query: 520 KKLRTKKRNPKSPTASTSKDTRRDTKKEKSPKT 618
+K T+ +N PT S S D+RR TK S T
Sbjct: 138 QKQSTESKNIPGPTNSISSDSRRITKTTNSNST 170
>SB_6719| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 437
Score = 27.9 bits (59), Expect = 7.8
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Frame = +1
Query: 373 VTEDDIREVSMR--ILQLYKRAKVNPEELETKVENLR--KIYIANKHSQE*KIKKLRTKK 540
V E DI + R ILQL + ++ L ++V N K ++ K+KK R KK
Sbjct: 346 VIETDIMKNYFRQHILQLLREYRIRKGTLPSRVTNTDNYKSRLSINEIVSKKLKKKRKKK 405
Query: 541 RNPKSPTASTSKDTRRDTKKEKSPK 615
+N K + + R+ +K K
Sbjct: 406 KNRKLRKRNRKRKQRKLARKRLKEK 430
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,105,549
Number of Sequences: 59808
Number of extensions: 372701
Number of successful extensions: 1301
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1293
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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