Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0497
         (664 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    27   0.16 
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     24   1.1  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   4.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   4.5  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    22   6.0  
AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex det...    21   7.9  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   7.9  

>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 27.1 bits (57), Expect = 0.16
 Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 6/64 (9%)
 Frame = +1

Query: 445 EELETKVENLRKIYIANKHSQE*KI--KKLRTKKRNP----KSPTASTSKDTRRDTKKEK 606
           E+L+ K+    ++YI   H+ E K+  ++ +TK ++P    +S T++TSK      K E 
Sbjct: 54  EKLKRKMILEYELYIKYSHTHEKKLVLERSKTKSKSPESRDRSNTSNTSKTFILSDKLES 113

Query: 607 SPKT 618
           S  T
Sbjct: 114 SDDT 117


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +3

Query: 150 LNIHTNLLWFTYNYCNMKKTAN 215
           L++H  LLW  + YC   K  N
Sbjct: 301 LSLHGQLLWREFFYCAATKNPN 322


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = +1

Query: 277  PPETIACACIYLTARKIGLPLPNNPH 354
            PPE + CA +   + ++    P N H
Sbjct: 1114 PPEDVRCAALTSQSLQVSWQPPPNTH 1139


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = +1

Query: 277  PPETIACACIYLTARKIGLPLPNNPH 354
            PPE + CA +   + ++    P N H
Sbjct: 1110 PPEDVRCAALTSQSLQVSWQPPPNTH 1135


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +2

Query: 416 NYINVLKSTLKNWRPKL 466
           N++NV++  LK + P+L
Sbjct: 216 NFMNVMRMKLKQFMPRL 232


>AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex
           determiner protein.
          Length = 385

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = +1

Query: 460 KVENLRKIYIANKHSQE*KIKKLRTKKRNPKSPTASTSKDTRRDTKKEKS 609
           K+ N +K  +  + S++   +  R+++R  KS     S    R+T KE+S
Sbjct: 254 KLHNEKKKLLEERTSRK---RYSRSREREQKSYKNENSYRKYRETSKERS 300


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 12/42 (28%), Positives = 18/42 (42%)
 Frame = +1

Query: 502 SQE*KIKKLRTKKRNPKSPTASTSKDTRRDTKKEKSPKTPPL 627
           S E K + +   K +      S    T+RD  +E   + PPL
Sbjct: 599 SNERKYEDVCVLKTDTNQSCPSPPVTTKRDGTQETEERLPPL 640


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,606
Number of Sequences: 438
Number of extensions: 3462
Number of successful extensions: 22
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19977660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)