BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0497 (664 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At2g26430.1 68415.m03171 ania-6a type cyclin (RCY1) nearly ident... 66 1e-11 At4g19600.1 68417.m02880 cyclin family protein similar to cyclin... 52 3e-07 At5g45190.1 68418.m05547 cyclin family protein similar to cyclin... 51 6e-07 At4g19560.1 68417.m02876 cyclin family protein similar to SP|O88... 44 9e-05 At1g35440.1 68414.m04396 cyclin family protein similar to SP|O75... 43 2e-04 At5g48630.1 68418.m06014 cyclin family protein similar to SP|P55... 31 0.68 At1g56660.1 68414.m06516 expressed protein 31 0.68 At1g65120.2 68414.m07382 ubiquitin carboxyl-terminal hydrolase-r... 31 0.90 At1g65120.1 68414.m07383 ubiquitin carboxyl-terminal hydrolase-r... 31 0.90 At5g48640.1 68418.m06015 cyclin family protein similar to SP|P55... 29 2.1 At4g03153.1 68417.m00429 kinase interacting family protein simil... 28 4.8 At2g42300.1 68415.m05236 basic helix-loop-helix (bHLH) family pr... 28 4.8 At5g15920.1 68418.m01862 structural maintenance of chromosomes (... 28 6.4 At5g01140.1 68418.m00018 hypothetical protein contains Pfam prof... 28 6.4 At4g39590.1 68417.m05597 kelch repeat-containing F-box family pr... 28 6.4 At3g28770.1 68416.m03591 expressed protein 28 6.4 At4g31210.1 68417.m04432 DNA topoisomerase family protein simila... 27 8.4 At4g20160.1 68417.m02949 expressed protein ; expression supporte... 27 8.4 >At2g26430.1 68415.m03171 ania-6a type cyclin (RCY1) nearly identical to ania-6a type cyclin [Arabidopsis thaliana] GI:13924511 Length = 416 Score = 66.5 bits (155), Expect = 1e-11 Identities = 37/86 (43%), Positives = 51/86 (59%), Gaps = 1/86 (1%) Frame = +2 Query: 2 VINVFHHIKQVRAQKTISPM-LVDQNYIELKNQVIKAERRILKELGFCVHVKHPHKLIVV 178 VI VFH ++ R + + + + + ELK ++ + ER ILKE+GF HV+HPHK I Sbjct: 101 VIIVFHRMECRRENLPLEHLDMYAKKFSELKVELSRTERHILKEMGFVCHVEHPHKFISN 160 Query: 179 YLQLLQYEKNRQLMQMAWNYMNDALR 256 YL L E +L Q AWN ND+LR Sbjct: 161 YLATL--ETPPELRQEAWNLANDSLR 184 Score = 50.8 bits (116), Expect = 8e-07 Identities = 22/61 (36%), Positives = 32/61 (52%) Frame = +1 Query: 253 KTDVFMRFPPETIACACIYLTARKIGLPLPNNPHWFLLFKVTEDDIREVSMRILQLYKRA 432 +T + +RF E +AC +Y AR+ +PLP NP W+ F + I EV + LY Sbjct: 184 RTTLCVRFRSEVVACGVVYAAARRFQVPLPENPPWWKAFDADKSSIDEVCRVLAHLYSLP 243 Query: 433 K 435 K Sbjct: 244 K 244 >At4g19600.1 68417.m02880 cyclin family protein similar to cyclin T2a [Homo sapiens] GI:2981198; contains Pfam profile PF00134: Cyclin, N-terminal domain Length = 541 Score = 52.0 bits (119), Expect = 3e-07 Identities = 32/101 (31%), Positives = 52/101 (51%) Frame = +2 Query: 2 VINVFHHIKQVRAQKTISPMLVDQNYIELKNQVIKAERRILKELGFCVHVKHPHKLIVVY 181 VI V + I + T + + Y + K ++ E+ +L LGF +V HP+K +V Sbjct: 126 VIVVSYEIIHKKDPTTAQKIKQKEVYEQQKELILNGEKIVLSTLGFDFNVYHPYKPLVEA 185 Query: 182 LQLLQYEKNRQLMQMAWNYMNDALRQMSL*DFLLKPLHVLA 304 ++ + +N L Q+AWN++ND LR F KP H+ A Sbjct: 186 IKKFKVAQN-ALAQVAWNFVNDGLRTSLCLQF--KPHHIAA 223 Score = 43.2 bits (97), Expect = 2e-04 Identities = 24/75 (32%), Positives = 43/75 (57%), Gaps = 2/75 (2%) Frame = +1 Query: 253 KTDVFMRFPPETIACACIYLTAR--KIGLPLPNNPHWFLLFKVTEDDIREVSMRILQLYK 426 +T + ++F P IA I+L A+ K+ LP W+ F VT + +VS ++L+LY+ Sbjct: 209 RTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDGEKVWWQEFDVTPRQLEDVSNQMLELYE 268 Query: 427 RAKVNPEELETKVEN 471 + +V P ++VE+ Sbjct: 269 QNRV-PASQVSEVES 282 >At5g45190.1 68418.m05547 cyclin family protein similar to cyclin T1 [Equus caballus] GI:5052355; contains Pfam profile PF00134: Cyclin, N-terminal domain Length = 579 Score = 51.2 bits (117), Expect = 6e-07 Identities = 27/76 (35%), Positives = 44/76 (57%) Frame = +2 Query: 77 YIELKNQVIKAERRILKELGFCVHVKHPHKLIVVYLQLLQYEKNRQLMQMAWNYMNDALR 256 Y + K ++ E+ +L LGF ++V HP+K +V ++ + +N L Q+AWN++ND LR Sbjct: 151 YEQQKELILNGEKIVLSTLGFDLNVYHPYKPLVEAIKKFKVAQN-ALAQVAWNFVNDGLR 209 Query: 257 QMSL*DFLLKPLHVLA 304 F KP H+ A Sbjct: 210 TSLCLQF--KPHHIAA 223 Score = 43.2 bits (97), Expect = 2e-04 Identities = 24/75 (32%), Positives = 43/75 (57%), Gaps = 2/75 (2%) Frame = +1 Query: 253 KTDVFMRFPPETIACACIYLTAR--KIGLPLPNNPHWFLLFKVTEDDIREVSMRILQLYK 426 +T + ++F P IA I+L A+ K+ LP W+ F VT + +VS ++L+LY+ Sbjct: 209 RTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDGEKVWWQEFDVTPRQLEDVSNQMLELYE 268 Query: 427 RAKVNPEELETKVEN 471 + +V P ++VE+ Sbjct: 269 QNRV-PASQGSEVES 282 >At4g19560.1 68417.m02876 cyclin family protein similar to SP|O88874 Cyclin K (Fragment) {Mus musculus}; contains Pfam profile PF00134: Cyclin, N-terminal domain Length = 474 Score = 44.0 bits (99), Expect = 9e-05 Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 1/61 (1%) Frame = +2 Query: 77 YIELKNQVIKAERRILKELGFCVHVKHPHKLIVVYLQLLQYEKNR-QLMQMAWNYMNDAL 253 Y + K V+ E +L L F + + HP+K +V ++ E + QL Q AWN++ND L Sbjct: 147 YDQQKELVLIGEELVLSTLNFDLCISHPYKPLVEAIKKYMVEDAKTQLAQFAWNFVNDCL 206 Query: 254 R 256 R Sbjct: 207 R 207 >At1g35440.1 68414.m04396 cyclin family protein similar to SP|O75909 Cyclin K {Homo sapiens}; contains Pfam profile PF00134: Cyclin, N-terminal domain Length = 247 Score = 42.7 bits (96), Expect = 2e-04 Identities = 20/58 (34%), Positives = 39/58 (67%), Gaps = 1/58 (1%) Frame = +2 Query: 86 LKNQVIKAERRILKELGFCVHVKHPHKLIVVYL-QLLQYEKNRQLMQMAWNYMNDALR 256 LK V+ E+ +L L + ++HP+KL++ ++ + ++ E R+L Q A+N++ND+LR Sbjct: 121 LKMTVLTGEKLVLSTLECDLEIEHPYKLVMDWVKRSVKTEDGRRLCQAAFNFVNDSLR 178 >At5g48630.1 68418.m06014 cyclin family protein similar to SP|P55168 Cyclin C {Gallus gallus}; contains Pfam profile PF00134: Cyclin, N-terminal domain Length = 253 Score = 31.1 bits (67), Expect = 0.68 Identities = 17/66 (25%), Positives = 31/66 (46%) Frame = +1 Query: 253 KTDVFMRFPPETIACACIYLTARKIGLPLPNNPHWFLLFKVTEDDIREVSMRILQLYKRA 432 + D+ + PP I ACIY+ + + WF V + ++ ++M IL Y+ Sbjct: 178 RMDLILIHPPFLITLACIYIASVHKEKDIKT---WFEELSVDMNIVKNIAMEILDFYENH 234 Query: 433 KVNPEE 450 ++ EE Sbjct: 235 RLFTEE 240 Score = 29.9 bits (64), Expect = 1.6 Identities = 15/58 (25%), Positives = 32/58 (55%) Frame = +2 Query: 83 ELKNQVIKAERRILKELGFCVHVKHPHKLIVVYLQLLQYEKNRQLMQMAWNYMNDALR 256 E+K+ +++ E ++L+ L F + V HP++ + +LQ + + + W +ND R Sbjct: 123 EIKD-ILEMEMKVLEALNFYLVVFHPYRSLPEFLQDSGI-NDTSMTHLTWGLVNDTYR 178 >At1g56660.1 68414.m06516 expressed protein Length = 522 Score = 31.1 bits (67), Expect = 0.68 Identities = 22/72 (30%), Positives = 33/72 (45%) Frame = +1 Query: 394 EVSMRILQLYKRAKVNPEELETKVENLRKIYIANKHSQE*KIKKLRTKKRNPKSPTASTS 573 EV R ++L + EE +T E +K + S+E K KK + KK+N K T Sbjct: 390 EVMSRDIKLEEPEAEKKEEDDT--EEKKKSKVEGGESEEGKKKKKKDKKKNKKKDTKEPK 447 Query: 574 KDTRRDTKKEKS 609 + KK+ S Sbjct: 448 MTEDEEEKKDDS 459 >At1g65120.2 68414.m07382 ubiquitin carboxyl-terminal hydrolase-related contains Pfam profiles PF00443: Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein of unknown function (DUF629), PF04781: Protein of unknown function (DUF627) Length = 1147 Score = 30.7 bits (66), Expect = 0.90 Identities = 24/92 (26%), Positives = 47/92 (51%), Gaps = 5/92 (5%) Frame = +1 Query: 364 LFKVTEDDIREVSMRILQLYKRAKVNP---EELETKVENLRKIYIANKHSQE*KIKKLRT 534 L K++ D R + +L+ Y+R +++ + +TK+ + +++ + ++ K Sbjct: 697 LVKLSVFDYRSYILHLLKRYQRDELDEIVDMDAKTKLAAAQAEHLSEEKQEKGKKSGSNK 756 Query: 535 KK-RNPKSPTASTSKDTRRDTKKEKSPK-TPP 624 KK R+ K +AS SKD ++ PK TPP Sbjct: 757 KKNRSNKRTSASMSKDDVHESSVNLEPKVTPP 788 >At1g65120.1 68414.m07383 ubiquitin carboxyl-terminal hydrolase-related contains Pfam profiles PF00443: Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein of unknown function (DUF629), PF04781: Protein of unknown function (DUF627) Length = 1121 Score = 30.7 bits (66), Expect = 0.90 Identities = 24/92 (26%), Positives = 47/92 (51%), Gaps = 5/92 (5%) Frame = +1 Query: 364 LFKVTEDDIREVSMRILQLYKRAKVNP---EELETKVENLRKIYIANKHSQE*KIKKLRT 534 L K++ D R + +L+ Y+R +++ + +TK+ + +++ + ++ K Sbjct: 697 LVKLSVFDYRSYILHLLKRYQRDELDEIVDMDAKTKLAAAQAEHLSEEKQEKGKKSGSNK 756 Query: 535 KK-RNPKSPTASTSKDTRRDTKKEKSPK-TPP 624 KK R+ K +AS SKD ++ PK TPP Sbjct: 757 KKNRSNKRTSASMSKDDVHESSVNLEPKVTPP 788 >At5g48640.1 68418.m06015 cyclin family protein similar to SP|P55168 Cyclin C {Gallus gallus}; contains Pfam profile PF00134: Cyclin, N-terminal domain Length = 253 Score = 29.5 bits (63), Expect = 2.1 Identities = 16/63 (25%), Positives = 34/63 (53%) Frame = +2 Query: 68 DQNYIELKNQVIKAERRILKELGFCVHVKHPHKLIVVYLQLLQYEKNRQLMQMAWNYMND 247 + N ELK+ ++ E ++L+ L + + V HP++ + +LQ + + Q+ W +ND Sbjct: 118 EYNKYELKD-ILGMEMKVLEALDYYLVVFHPYRSLSEFLQDAAL-NDVNMNQITWGIVND 175 Query: 248 ALR 256 + Sbjct: 176 TYK 178 Score = 29.5 bits (63), Expect = 2.1 Identities = 18/66 (27%), Positives = 30/66 (45%) Frame = +1 Query: 253 KTDVFMRFPPETIACACIYLTARKIGLPLPNNPHWFLLFKVTEDDIREVSMRILQLYKRA 432 K D+ + PP IA ACIY+ + + WF + ++ ++M IL Y+ Sbjct: 178 KMDLILVHPPYRIALACIYIASVHREKDI---TAWFEDLHEDMNLVKNIAMEILDFYENY 234 Query: 433 KVNPEE 450 + EE Sbjct: 235 RTITEE 240 >At4g03153.1 68417.m00429 kinase interacting family protein similar to kinase interacting protein 1 (GI:13936326) [Petunia integrifolia] Length = 215 Score = 28.3 bits (60), Expect = 4.8 Identities = 16/62 (25%), Positives = 31/62 (50%) Frame = +1 Query: 418 LYKRAKVNPEELETKVENLRKIYIANKHSQE*KIKKLRTKKRNPKSPTASTSKDTRRDTK 597 L KRAK+N E +E L ++Y +++ + ++T N S +S+ + R + Sbjct: 51 LMKRAKINYENKPKLIELLEELYRSHRSLAQKHDLLIKTSSLNSDSHNSSSCDEIRSEVC 110 Query: 598 KE 603 +E Sbjct: 111 EE 112 >At2g42300.1 68415.m05236 basic helix-loop-helix (bHLH) family protein contains Pfam profile: PF00010 helix-loop-helix DNA-binding domain Length = 327 Score = 28.3 bits (60), Expect = 4.8 Identities = 14/38 (36%), Positives = 19/38 (50%) Frame = +1 Query: 427 RAKVNPEELETKVENLRKIYIANKHSQE*KIKKLRTKK 540 R K P E ++ VEN + Y + K + K K TKK Sbjct: 133 RVKAEPAETDSMVENQNQSYSSGKRKEREKKVKSSTKK 170 >At5g15920.1 68418.m01862 structural maintenance of chromosomes (SMC) family protein (MSS2) similar to SMC-related protein MSS2 [Arabidopsis thaliana] GI:9965743; contains Pfam profiles PF02483: SMC family C-terminal domain, PF02463: RecF/RecN/SMC N terminal domain Length = 1053 Score = 27.9 bits (59), Expect = 6.4 Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 1/80 (1%) Frame = +1 Query: 364 LFKVTEDDIR-EVSMRILQLYKRAKVNPEELETKVENLRKIYIANKHSQE*KIKKLRTKK 540 + K TED + E ++ L +Y+R EEL ++V L I K +Q+ +KL ++K Sbjct: 344 ILKATEDLVAAERELQNLPVYERPVAKLEELSSQVTELHH-SINGKKNQKEDNEKLLSQK 402 Query: 541 RNPKSPTASTSKDTRRDTKK 600 R KD K Sbjct: 403 RYTLRQCVDKLKDMENANNK 422 >At5g01140.1 68418.m00018 hypothetical protein contains Pfam profile PF05056: Protein of unknown function (DUF674) Length = 473 Score = 27.9 bits (59), Expect = 6.4 Identities = 11/23 (47%), Positives = 11/23 (47%) Frame = -2 Query: 222 CISWRFFSYCSNCK*TTISLCGC 154 C RFFS C C SLC C Sbjct: 99 CFGCRFFSICRMCSNFNTSLCKC 121 >At4g39590.1 68417.m05597 kelch repeat-containing F-box family protein contains F-box domain Pfam:PF00646 and Kelch motif Pfam:PF01344 Length = 402 Score = 27.9 bits (59), Expect = 6.4 Identities = 11/24 (45%), Positives = 14/24 (58%) Frame = +1 Query: 301 CIYLTARKIGLPLPNNPHWFLLFK 372 C+YL R P NN HWF L++ Sbjct: 90 CLYLCLR---FPFDNNTHWFTLYQ 110 >At3g28770.1 68416.m03591 expressed protein Length = 2081 Score = 27.9 bits (59), Expect = 6.4 Identities = 18/65 (27%), Positives = 36/65 (55%), Gaps = 1/65 (1%) Frame = +1 Query: 424 KRAKVNPEELETKVENLRKIYIANKHSQE*KIKKLRTKKRNPKSPTASTSKDTRRDTKKE 603 ++ +V+ +E ++ + +K K S+E KKL+ + + K T+ +++TKKE Sbjct: 1174 QKNEVDKKEKKSSKDQQKKKEKEMKESEE---KKLKKNEEDRKKQTSVEENKKQKETKKE 1230 Query: 604 KS-PK 615 K+ PK Sbjct: 1231 KNKPK 1235 >At4g31210.1 68417.m04432 DNA topoisomerase family protein similar to DNA Topoisomerase I (SP:Q9X3X7) {Zymomonas mobilis} Length = 1280 Score = 27.5 bits (58), Expect = 8.4 Identities = 15/43 (34%), Positives = 21/43 (48%) Frame = +1 Query: 493 NKHSQE*KIKKLRTKKRNPKSPTASTSKDTRRDTKKEKSPKTP 621 N+ S K+ K + PKSP S SK ++ K K+ K P Sbjct: 401 NRKSSSAKVAKNHPVEE-PKSPAPSNSKSEQQHLKSTKASKAP 442 >At4g20160.1 68417.m02949 expressed protein ; expression supported by MPSS Length = 1188 Score = 27.5 bits (58), Expect = 8.4 Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 1/59 (1%) Frame = +1 Query: 436 VNPEELETKVEN-LRKIYIANKHSQE*KIKKLRTKKRNPKSPTASTSKDTRRDTKKEKS 609 + P+ + T+ ++ LRK I K QE T K + K PT S++ RR+ ++E+S Sbjct: 582 IKPQGVTTQADSCLRKPAIEEKVLQE------TTVKSDLKKPTEKESREERREIEEEES 634 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,585,248 Number of Sequences: 28952 Number of extensions: 266051 Number of successful extensions: 896 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 847 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 891 length of database: 12,070,560 effective HSP length: 78 effective length of database: 9,812,304 effective search space used: 1393347168 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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