Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0497
(664 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g26430.1 68415.m03171 ania-6a type cyclin (RCY1) nearly ident... 66 1e-11
At4g19600.1 68417.m02880 cyclin family protein similar to cyclin... 52 3e-07
At5g45190.1 68418.m05547 cyclin family protein similar to cyclin... 51 6e-07
At4g19560.1 68417.m02876 cyclin family protein similar to SP|O88... 44 9e-05
At1g35440.1 68414.m04396 cyclin family protein similar to SP|O75... 43 2e-04
At5g48630.1 68418.m06014 cyclin family protein similar to SP|P55... 31 0.68
At1g56660.1 68414.m06516 expressed protein 31 0.68
At1g65120.2 68414.m07382 ubiquitin carboxyl-terminal hydrolase-r... 31 0.90
At1g65120.1 68414.m07383 ubiquitin carboxyl-terminal hydrolase-r... 31 0.90
At5g48640.1 68418.m06015 cyclin family protein similar to SP|P55... 29 2.1
At4g03153.1 68417.m00429 kinase interacting family protein simil... 28 4.8
At2g42300.1 68415.m05236 basic helix-loop-helix (bHLH) family pr... 28 4.8
At5g15920.1 68418.m01862 structural maintenance of chromosomes (... 28 6.4
At5g01140.1 68418.m00018 hypothetical protein contains Pfam prof... 28 6.4
At4g39590.1 68417.m05597 kelch repeat-containing F-box family pr... 28 6.4
At3g28770.1 68416.m03591 expressed protein 28 6.4
At4g31210.1 68417.m04432 DNA topoisomerase family protein simila... 27 8.4
At4g20160.1 68417.m02949 expressed protein ; expression supporte... 27 8.4
>At2g26430.1 68415.m03171 ania-6a type cyclin (RCY1) nearly
identical to ania-6a type cyclin [Arabidopsis thaliana]
GI:13924511
Length = 416
Score = 66.5 bits (155), Expect = 1e-11
Identities = 37/86 (43%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Frame = +2
Query: 2 VINVFHHIKQVRAQKTISPM-LVDQNYIELKNQVIKAERRILKELGFCVHVKHPHKLIVV 178
VI VFH ++ R + + + + + ELK ++ + ER ILKE+GF HV+HPHK I
Sbjct: 101 VIIVFHRMECRRENLPLEHLDMYAKKFSELKVELSRTERHILKEMGFVCHVEHPHKFISN 160
Query: 179 YLQLLQYEKNRQLMQMAWNYMNDALR 256
YL L E +L Q AWN ND+LR
Sbjct: 161 YLATL--ETPPELRQEAWNLANDSLR 184
Score = 50.8 bits (116), Expect = 8e-07
Identities = 22/61 (36%), Positives = 32/61 (52%)
Frame = +1
Query: 253 KTDVFMRFPPETIACACIYLTARKIGLPLPNNPHWFLLFKVTEDDIREVSMRILQLYKRA 432
+T + +RF E +AC +Y AR+ +PLP NP W+ F + I EV + LY
Sbjct: 184 RTTLCVRFRSEVVACGVVYAAARRFQVPLPENPPWWKAFDADKSSIDEVCRVLAHLYSLP 243
Query: 433 K 435
K
Sbjct: 244 K 244
>At4g19600.1 68417.m02880 cyclin family protein similar to cyclin
T2a [Homo sapiens] GI:2981198; contains Pfam profile
PF00134: Cyclin, N-terminal domain
Length = 541
Score = 52.0 bits (119), Expect = 3e-07
Identities = 32/101 (31%), Positives = 52/101 (51%)
Frame = +2
Query: 2 VINVFHHIKQVRAQKTISPMLVDQNYIELKNQVIKAERRILKELGFCVHVKHPHKLIVVY 181
VI V + I + T + + Y + K ++ E+ +L LGF +V HP+K +V
Sbjct: 126 VIVVSYEIIHKKDPTTAQKIKQKEVYEQQKELILNGEKIVLSTLGFDFNVYHPYKPLVEA 185
Query: 182 LQLLQYEKNRQLMQMAWNYMNDALRQMSL*DFLLKPLHVLA 304
++ + +N L Q+AWN++ND LR F KP H+ A
Sbjct: 186 IKKFKVAQN-ALAQVAWNFVNDGLRTSLCLQF--KPHHIAA 223
Score = 43.2 bits (97), Expect = 2e-04
Identities = 24/75 (32%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Frame = +1
Query: 253 KTDVFMRFPPETIACACIYLTAR--KIGLPLPNNPHWFLLFKVTEDDIREVSMRILQLYK 426
+T + ++F P IA I+L A+ K+ LP W+ F VT + +VS ++L+LY+
Sbjct: 209 RTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDGEKVWWQEFDVTPRQLEDVSNQMLELYE 268
Query: 427 RAKVNPEELETKVEN 471
+ +V P ++VE+
Sbjct: 269 QNRV-PASQVSEVES 282
>At5g45190.1 68418.m05547 cyclin family protein similar to cyclin T1
[Equus caballus] GI:5052355; contains Pfam profile
PF00134: Cyclin, N-terminal domain
Length = 579
Score = 51.2 bits (117), Expect = 6e-07
Identities = 27/76 (35%), Positives = 44/76 (57%)
Frame = +2
Query: 77 YIELKNQVIKAERRILKELGFCVHVKHPHKLIVVYLQLLQYEKNRQLMQMAWNYMNDALR 256
Y + K ++ E+ +L LGF ++V HP+K +V ++ + +N L Q+AWN++ND LR
Sbjct: 151 YEQQKELILNGEKIVLSTLGFDLNVYHPYKPLVEAIKKFKVAQN-ALAQVAWNFVNDGLR 209
Query: 257 QMSL*DFLLKPLHVLA 304
F KP H+ A
Sbjct: 210 TSLCLQF--KPHHIAA 223
Score = 43.2 bits (97), Expect = 2e-04
Identities = 24/75 (32%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Frame = +1
Query: 253 KTDVFMRFPPETIACACIYLTAR--KIGLPLPNNPHWFLLFKVTEDDIREVSMRILQLYK 426
+T + ++F P IA I+L A+ K+ LP W+ F VT + +VS ++L+LY+
Sbjct: 209 RTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDGEKVWWQEFDVTPRQLEDVSNQMLELYE 268
Query: 427 RAKVNPEELETKVEN 471
+ +V P ++VE+
Sbjct: 269 QNRV-PASQGSEVES 282
>At4g19560.1 68417.m02876 cyclin family protein similar to SP|O88874
Cyclin K (Fragment) {Mus musculus}; contains Pfam
profile PF00134: Cyclin, N-terminal domain
Length = 474
Score = 44.0 bits (99), Expect = 9e-05
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Frame = +2
Query: 77 YIELKNQVIKAERRILKELGFCVHVKHPHKLIVVYLQLLQYEKNR-QLMQMAWNYMNDAL 253
Y + K V+ E +L L F + + HP+K +V ++ E + QL Q AWN++ND L
Sbjct: 147 YDQQKELVLIGEELVLSTLNFDLCISHPYKPLVEAIKKYMVEDAKTQLAQFAWNFVNDCL 206
Query: 254 R 256
R
Sbjct: 207 R 207
>At1g35440.1 68414.m04396 cyclin family protein similar to SP|O75909
Cyclin K {Homo sapiens}; contains Pfam profile PF00134:
Cyclin, N-terminal domain
Length = 247
Score = 42.7 bits (96), Expect = 2e-04
Identities = 20/58 (34%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Frame = +2
Query: 86 LKNQVIKAERRILKELGFCVHVKHPHKLIVVYL-QLLQYEKNRQLMQMAWNYMNDALR 256
LK V+ E+ +L L + ++HP+KL++ ++ + ++ E R+L Q A+N++ND+LR
Sbjct: 121 LKMTVLTGEKLVLSTLECDLEIEHPYKLVMDWVKRSVKTEDGRRLCQAAFNFVNDSLR 178
>At5g48630.1 68418.m06014 cyclin family protein similar to SP|P55168
Cyclin C {Gallus gallus}; contains Pfam profile PF00134:
Cyclin, N-terminal domain
Length = 253
Score = 31.1 bits (67), Expect = 0.68
Identities = 17/66 (25%), Positives = 31/66 (46%)
Frame = +1
Query: 253 KTDVFMRFPPETIACACIYLTARKIGLPLPNNPHWFLLFKVTEDDIREVSMRILQLYKRA 432
+ D+ + PP I ACIY+ + + WF V + ++ ++M IL Y+
Sbjct: 178 RMDLILIHPPFLITLACIYIASVHKEKDIKT---WFEELSVDMNIVKNIAMEILDFYENH 234
Query: 433 KVNPEE 450
++ EE
Sbjct: 235 RLFTEE 240
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/58 (25%), Positives = 32/58 (55%)
Frame = +2
Query: 83 ELKNQVIKAERRILKELGFCVHVKHPHKLIVVYLQLLQYEKNRQLMQMAWNYMNDALR 256
E+K+ +++ E ++L+ L F + V HP++ + +LQ + + + W +ND R
Sbjct: 123 EIKD-ILEMEMKVLEALNFYLVVFHPYRSLPEFLQDSGI-NDTSMTHLTWGLVNDTYR 178
>At1g56660.1 68414.m06516 expressed protein
Length = 522
Score = 31.1 bits (67), Expect = 0.68
Identities = 22/72 (30%), Positives = 33/72 (45%)
Frame = +1
Query: 394 EVSMRILQLYKRAKVNPEELETKVENLRKIYIANKHSQE*KIKKLRTKKRNPKSPTASTS 573
EV R ++L + EE +T E +K + S+E K KK + KK+N K T
Sbjct: 390 EVMSRDIKLEEPEAEKKEEDDT--EEKKKSKVEGGESEEGKKKKKKDKKKNKKKDTKEPK 447
Query: 574 KDTRRDTKKEKS 609
+ KK+ S
Sbjct: 448 MTEDEEEKKDDS 459
>At1g65120.2 68414.m07382 ubiquitin carboxyl-terminal
hydrolase-related contains Pfam profiles PF00443:
Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
of unknown function (DUF629), PF04781: Protein of
unknown function (DUF627)
Length = 1147
Score = 30.7 bits (66), Expect = 0.90
Identities = 24/92 (26%), Positives = 47/92 (51%), Gaps = 5/92 (5%)
Frame = +1
Query: 364 LFKVTEDDIREVSMRILQLYKRAKVNP---EELETKVENLRKIYIANKHSQE*KIKKLRT 534
L K++ D R + +L+ Y+R +++ + +TK+ + +++ + ++ K
Sbjct: 697 LVKLSVFDYRSYILHLLKRYQRDELDEIVDMDAKTKLAAAQAEHLSEEKQEKGKKSGSNK 756
Query: 535 KK-RNPKSPTASTSKDTRRDTKKEKSPK-TPP 624
KK R+ K +AS SKD ++ PK TPP
Sbjct: 757 KKNRSNKRTSASMSKDDVHESSVNLEPKVTPP 788
>At1g65120.1 68414.m07383 ubiquitin carboxyl-terminal
hydrolase-related contains Pfam profiles PF00443:
Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
of unknown function (DUF629), PF04781: Protein of
unknown function (DUF627)
Length = 1121
Score = 30.7 bits (66), Expect = 0.90
Identities = 24/92 (26%), Positives = 47/92 (51%), Gaps = 5/92 (5%)
Frame = +1
Query: 364 LFKVTEDDIREVSMRILQLYKRAKVNP---EELETKVENLRKIYIANKHSQE*KIKKLRT 534
L K++ D R + +L+ Y+R +++ + +TK+ + +++ + ++ K
Sbjct: 697 LVKLSVFDYRSYILHLLKRYQRDELDEIVDMDAKTKLAAAQAEHLSEEKQEKGKKSGSNK 756
Query: 535 KK-RNPKSPTASTSKDTRRDTKKEKSPK-TPP 624
KK R+ K +AS SKD ++ PK TPP
Sbjct: 757 KKNRSNKRTSASMSKDDVHESSVNLEPKVTPP 788
>At5g48640.1 68418.m06015 cyclin family protein similar to SP|P55168
Cyclin C {Gallus gallus}; contains Pfam profile PF00134:
Cyclin, N-terminal domain
Length = 253
Score = 29.5 bits (63), Expect = 2.1
Identities = 16/63 (25%), Positives = 34/63 (53%)
Frame = +2
Query: 68 DQNYIELKNQVIKAERRILKELGFCVHVKHPHKLIVVYLQLLQYEKNRQLMQMAWNYMND 247
+ N ELK+ ++ E ++L+ L + + V HP++ + +LQ + + Q+ W +ND
Sbjct: 118 EYNKYELKD-ILGMEMKVLEALDYYLVVFHPYRSLSEFLQDAAL-NDVNMNQITWGIVND 175
Query: 248 ALR 256
+
Sbjct: 176 TYK 178
Score = 29.5 bits (63), Expect = 2.1
Identities = 18/66 (27%), Positives = 30/66 (45%)
Frame = +1
Query: 253 KTDVFMRFPPETIACACIYLTARKIGLPLPNNPHWFLLFKVTEDDIREVSMRILQLYKRA 432
K D+ + PP IA ACIY+ + + WF + ++ ++M IL Y+
Sbjct: 178 KMDLILVHPPYRIALACIYIASVHREKDI---TAWFEDLHEDMNLVKNIAMEILDFYENY 234
Query: 433 KVNPEE 450
+ EE
Sbjct: 235 RTITEE 240
>At4g03153.1 68417.m00429 kinase interacting family protein similar
to kinase interacting protein 1 (GI:13936326) [Petunia
integrifolia]
Length = 215
Score = 28.3 bits (60), Expect = 4.8
Identities = 16/62 (25%), Positives = 31/62 (50%)
Frame = +1
Query: 418 LYKRAKVNPEELETKVENLRKIYIANKHSQE*KIKKLRTKKRNPKSPTASTSKDTRRDTK 597
L KRAK+N E +E L ++Y +++ + ++T N S +S+ + R +
Sbjct: 51 LMKRAKINYENKPKLIELLEELYRSHRSLAQKHDLLIKTSSLNSDSHNSSSCDEIRSEVC 110
Query: 598 KE 603
+E
Sbjct: 111 EE 112
>At2g42300.1 68415.m05236 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 327
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +1
Query: 427 RAKVNPEELETKVENLRKIYIANKHSQE*KIKKLRTKK 540
R K P E ++ VEN + Y + K + K K TKK
Sbjct: 133 RVKAEPAETDSMVENQNQSYSSGKRKEREKKVKSSTKK 170
>At5g15920.1 68418.m01862 structural maintenance of chromosomes
(SMC) family protein (MSS2) similar to SMC-related
protein MSS2 [Arabidopsis thaliana] GI:9965743; contains
Pfam profiles PF02483: SMC family C-terminal domain,
PF02463: RecF/RecN/SMC N terminal domain
Length = 1053
Score = 27.9 bits (59), Expect = 6.4
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Frame = +1
Query: 364 LFKVTEDDIR-EVSMRILQLYKRAKVNPEELETKVENLRKIYIANKHSQE*KIKKLRTKK 540
+ K TED + E ++ L +Y+R EEL ++V L I K +Q+ +KL ++K
Sbjct: 344 ILKATEDLVAAERELQNLPVYERPVAKLEELSSQVTELHH-SINGKKNQKEDNEKLLSQK 402
Query: 541 RNPKSPTASTSKDTRRDTKK 600
R KD K
Sbjct: 403 RYTLRQCVDKLKDMENANNK 422
>At5g01140.1 68418.m00018 hypothetical protein contains Pfam profile
PF05056: Protein of unknown function (DUF674)
Length = 473
Score = 27.9 bits (59), Expect = 6.4
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = -2
Query: 222 CISWRFFSYCSNCK*TTISLCGC 154
C RFFS C C SLC C
Sbjct: 99 CFGCRFFSICRMCSNFNTSLCKC 121
>At4g39590.1 68417.m05597 kelch repeat-containing F-box family
protein contains F-box domain Pfam:PF00646 and Kelch
motif Pfam:PF01344
Length = 402
Score = 27.9 bits (59), Expect = 6.4
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +1
Query: 301 CIYLTARKIGLPLPNNPHWFLLFK 372
C+YL R P NN HWF L++
Sbjct: 90 CLYLCLR---FPFDNNTHWFTLYQ 110
>At3g28770.1 68416.m03591 expressed protein
Length = 2081
Score = 27.9 bits (59), Expect = 6.4
Identities = 18/65 (27%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Frame = +1
Query: 424 KRAKVNPEELETKVENLRKIYIANKHSQE*KIKKLRTKKRNPKSPTASTSKDTRRDTKKE 603
++ +V+ +E ++ + +K K S+E KKL+ + + K T+ +++TKKE
Sbjct: 1174 QKNEVDKKEKKSSKDQQKKKEKEMKESEE---KKLKKNEEDRKKQTSVEENKKQKETKKE 1230
Query: 604 KS-PK 615
K+ PK
Sbjct: 1231 KNKPK 1235
>At4g31210.1 68417.m04432 DNA topoisomerase family protein similar
to DNA Topoisomerase I (SP:Q9X3X7) {Zymomonas mobilis}
Length = 1280
Score = 27.5 bits (58), Expect = 8.4
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +1
Query: 493 NKHSQE*KIKKLRTKKRNPKSPTASTSKDTRRDTKKEKSPKTP 621
N+ S K+ K + PKSP S SK ++ K K+ K P
Sbjct: 401 NRKSSSAKVAKNHPVEE-PKSPAPSNSKSEQQHLKSTKASKAP 442
>At4g20160.1 68417.m02949 expressed protein ; expression supported
by MPSS
Length = 1188
Score = 27.5 bits (58), Expect = 8.4
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = +1
Query: 436 VNPEELETKVEN-LRKIYIANKHSQE*KIKKLRTKKRNPKSPTASTSKDTRRDTKKEKS 609
+ P+ + T+ ++ LRK I K QE T K + K PT S++ RR+ ++E+S
Sbjct: 582 IKPQGVTTQADSCLRKPAIEEKVLQE------TTVKSDLKKPTEKESREERREIEEEES 634
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,585,248
Number of Sequences: 28952
Number of extensions: 266051
Number of successful extensions: 896
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 891
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1393347168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -