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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0497
         (664 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g26430.1 68415.m03171 ania-6a type cyclin (RCY1) nearly ident...    66   1e-11
At4g19600.1 68417.m02880 cyclin family protein similar to cyclin...    52   3e-07
At5g45190.1 68418.m05547 cyclin family protein similar to cyclin...    51   6e-07
At4g19560.1 68417.m02876 cyclin family protein similar to SP|O88...    44   9e-05
At1g35440.1 68414.m04396 cyclin family protein similar to SP|O75...    43   2e-04
At5g48630.1 68418.m06014 cyclin family protein similar to SP|P55...    31   0.68 
At1g56660.1 68414.m06516 expressed protein                             31   0.68 
At1g65120.2 68414.m07382 ubiquitin carboxyl-terminal hydrolase-r...    31   0.90 
At1g65120.1 68414.m07383 ubiquitin carboxyl-terminal hydrolase-r...    31   0.90 
At5g48640.1 68418.m06015 cyclin family protein similar to SP|P55...    29   2.1  
At4g03153.1 68417.m00429 kinase interacting family protein simil...    28   4.8  
At2g42300.1 68415.m05236 basic helix-loop-helix (bHLH) family pr...    28   4.8  
At5g15920.1 68418.m01862 structural maintenance of chromosomes (...    28   6.4  
At5g01140.1 68418.m00018 hypothetical protein contains Pfam prof...    28   6.4  
At4g39590.1 68417.m05597 kelch repeat-containing F-box family pr...    28   6.4  
At3g28770.1 68416.m03591 expressed protein                             28   6.4  
At4g31210.1 68417.m04432 DNA topoisomerase family protein simila...    27   8.4  
At4g20160.1 68417.m02949 expressed protein ; expression supporte...    27   8.4  

>At2g26430.1 68415.m03171 ania-6a type cyclin (RCY1) nearly
           identical to ania-6a type cyclin [Arabidopsis thaliana]
           GI:13924511
          Length = 416

 Score = 66.5 bits (155), Expect = 1e-11
 Identities = 37/86 (43%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
 Frame = +2

Query: 2   VINVFHHIKQVRAQKTISPM-LVDQNYIELKNQVIKAERRILKELGFCVHVKHPHKLIVV 178
           VI VFH ++  R    +  + +  + + ELK ++ + ER ILKE+GF  HV+HPHK I  
Sbjct: 101 VIIVFHRMECRRENLPLEHLDMYAKKFSELKVELSRTERHILKEMGFVCHVEHPHKFISN 160

Query: 179 YLQLLQYEKNRQLMQMAWNYMNDALR 256
           YL  L  E   +L Q AWN  ND+LR
Sbjct: 161 YLATL--ETPPELRQEAWNLANDSLR 184



 Score = 50.8 bits (116), Expect = 8e-07
 Identities = 22/61 (36%), Positives = 32/61 (52%)
 Frame = +1

Query: 253 KTDVFMRFPPETIACACIYLTARKIGLPLPNNPHWFLLFKVTEDDIREVSMRILQLYKRA 432
           +T + +RF  E +AC  +Y  AR+  +PLP NP W+  F   +  I EV   +  LY   
Sbjct: 184 RTTLCVRFRSEVVACGVVYAAARRFQVPLPENPPWWKAFDADKSSIDEVCRVLAHLYSLP 243

Query: 433 K 435
           K
Sbjct: 244 K 244


>At4g19600.1 68417.m02880 cyclin family protein similar to cyclin
           T2a [Homo sapiens] GI:2981198; contains Pfam profile
           PF00134: Cyclin, N-terminal domain
          Length = 541

 Score = 52.0 bits (119), Expect = 3e-07
 Identities = 32/101 (31%), Positives = 52/101 (51%)
 Frame = +2

Query: 2   VINVFHHIKQVRAQKTISPMLVDQNYIELKNQVIKAERRILKELGFCVHVKHPHKLIVVY 181
           VI V + I   +   T   +   + Y + K  ++  E+ +L  LGF  +V HP+K +V  
Sbjct: 126 VIVVSYEIIHKKDPTTAQKIKQKEVYEQQKELILNGEKIVLSTLGFDFNVYHPYKPLVEA 185

Query: 182 LQLLQYEKNRQLMQMAWNYMNDALRQMSL*DFLLKPLHVLA 304
           ++  +  +N  L Q+AWN++ND LR      F  KP H+ A
Sbjct: 186 IKKFKVAQN-ALAQVAWNFVNDGLRTSLCLQF--KPHHIAA 223



 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 24/75 (32%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
 Frame = +1

Query: 253 KTDVFMRFPPETIACACIYLTAR--KIGLPLPNNPHWFLLFKVTEDDIREVSMRILQLYK 426
           +T + ++F P  IA   I+L A+  K+ LP      W+  F VT   + +VS ++L+LY+
Sbjct: 209 RTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDGEKVWWQEFDVTPRQLEDVSNQMLELYE 268

Query: 427 RAKVNPEELETKVEN 471
           + +V P    ++VE+
Sbjct: 269 QNRV-PASQVSEVES 282


>At5g45190.1 68418.m05547 cyclin family protein similar to cyclin T1
           [Equus caballus] GI:5052355; contains Pfam profile
           PF00134: Cyclin, N-terminal domain
          Length = 579

 Score = 51.2 bits (117), Expect = 6e-07
 Identities = 27/76 (35%), Positives = 44/76 (57%)
 Frame = +2

Query: 77  YIELKNQVIKAERRILKELGFCVHVKHPHKLIVVYLQLLQYEKNRQLMQMAWNYMNDALR 256
           Y + K  ++  E+ +L  LGF ++V HP+K +V  ++  +  +N  L Q+AWN++ND LR
Sbjct: 151 YEQQKELILNGEKIVLSTLGFDLNVYHPYKPLVEAIKKFKVAQN-ALAQVAWNFVNDGLR 209

Query: 257 QMSL*DFLLKPLHVLA 304
                 F  KP H+ A
Sbjct: 210 TSLCLQF--KPHHIAA 223



 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 24/75 (32%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
 Frame = +1

Query: 253 KTDVFMRFPPETIACACIYLTAR--KIGLPLPNNPHWFLLFKVTEDDIREVSMRILQLYK 426
           +T + ++F P  IA   I+L A+  K+ LP      W+  F VT   + +VS ++L+LY+
Sbjct: 209 RTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDGEKVWWQEFDVTPRQLEDVSNQMLELYE 268

Query: 427 RAKVNPEELETKVEN 471
           + +V P    ++VE+
Sbjct: 269 QNRV-PASQGSEVES 282


>At4g19560.1 68417.m02876 cyclin family protein similar to SP|O88874
           Cyclin K (Fragment) {Mus musculus}; contains Pfam
           profile PF00134: Cyclin, N-terminal domain
          Length = 474

 Score = 44.0 bits (99), Expect = 9e-05
 Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
 Frame = +2

Query: 77  YIELKNQVIKAERRILKELGFCVHVKHPHKLIVVYLQLLQYEKNR-QLMQMAWNYMNDAL 253
           Y + K  V+  E  +L  L F + + HP+K +V  ++    E  + QL Q AWN++ND L
Sbjct: 147 YDQQKELVLIGEELVLSTLNFDLCISHPYKPLVEAIKKYMVEDAKTQLAQFAWNFVNDCL 206

Query: 254 R 256
           R
Sbjct: 207 R 207


>At1g35440.1 68414.m04396 cyclin family protein similar to SP|O75909
           Cyclin K {Homo sapiens}; contains Pfam profile PF00134:
           Cyclin, N-terminal domain
          Length = 247

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 20/58 (34%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
 Frame = +2

Query: 86  LKNQVIKAERRILKELGFCVHVKHPHKLIVVYL-QLLQYEKNRQLMQMAWNYMNDALR 256
           LK  V+  E+ +L  L   + ++HP+KL++ ++ + ++ E  R+L Q A+N++ND+LR
Sbjct: 121 LKMTVLTGEKLVLSTLECDLEIEHPYKLVMDWVKRSVKTEDGRRLCQAAFNFVNDSLR 178


>At5g48630.1 68418.m06014 cyclin family protein similar to SP|P55168
           Cyclin C {Gallus gallus}; contains Pfam profile PF00134:
           Cyclin, N-terminal domain
          Length = 253

 Score = 31.1 bits (67), Expect = 0.68
 Identities = 17/66 (25%), Positives = 31/66 (46%)
 Frame = +1

Query: 253 KTDVFMRFPPETIACACIYLTARKIGLPLPNNPHWFLLFKVTEDDIREVSMRILQLYKRA 432
           + D+ +  PP  I  ACIY+ +      +     WF    V  + ++ ++M IL  Y+  
Sbjct: 178 RMDLILIHPPFLITLACIYIASVHKEKDIKT---WFEELSVDMNIVKNIAMEILDFYENH 234

Query: 433 KVNPEE 450
           ++  EE
Sbjct: 235 RLFTEE 240



 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/58 (25%), Positives = 32/58 (55%)
 Frame = +2

Query: 83  ELKNQVIKAERRILKELGFCVHVKHPHKLIVVYLQLLQYEKNRQLMQMAWNYMNDALR 256
           E+K+ +++ E ++L+ L F + V HP++ +  +LQ      +  +  + W  +ND  R
Sbjct: 123 EIKD-ILEMEMKVLEALNFYLVVFHPYRSLPEFLQDSGI-NDTSMTHLTWGLVNDTYR 178


>At1g56660.1 68414.m06516 expressed protein
          Length = 522

 Score = 31.1 bits (67), Expect = 0.68
 Identities = 22/72 (30%), Positives = 33/72 (45%)
 Frame = +1

Query: 394 EVSMRILQLYKRAKVNPEELETKVENLRKIYIANKHSQE*KIKKLRTKKRNPKSPTASTS 573
           EV  R ++L +      EE +T  E  +K  +    S+E K KK + KK+N K  T    
Sbjct: 390 EVMSRDIKLEEPEAEKKEEDDT--EEKKKSKVEGGESEEGKKKKKKDKKKNKKKDTKEPK 447

Query: 574 KDTRRDTKKEKS 609
                + KK+ S
Sbjct: 448 MTEDEEEKKDDS 459


>At1g65120.2 68414.m07382 ubiquitin carboxyl-terminal
           hydrolase-related contains Pfam profiles PF00443:
           Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
           of unknown function (DUF629), PF04781: Protein of
           unknown function (DUF627)
          Length = 1147

 Score = 30.7 bits (66), Expect = 0.90
 Identities = 24/92 (26%), Positives = 47/92 (51%), Gaps = 5/92 (5%)
 Frame = +1

Query: 364 LFKVTEDDIREVSMRILQLYKRAKVNP---EELETKVENLRKIYIANKHSQE*KIKKLRT 534
           L K++  D R   + +L+ Y+R +++     + +TK+   +  +++ +  ++ K      
Sbjct: 697 LVKLSVFDYRSYILHLLKRYQRDELDEIVDMDAKTKLAAAQAEHLSEEKQEKGKKSGSNK 756

Query: 535 KK-RNPKSPTASTSKDTRRDTKKEKSPK-TPP 624
           KK R+ K  +AS SKD   ++     PK TPP
Sbjct: 757 KKNRSNKRTSASMSKDDVHESSVNLEPKVTPP 788


>At1g65120.1 68414.m07383 ubiquitin carboxyl-terminal
           hydrolase-related contains Pfam profiles PF00443:
           Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
           of unknown function (DUF629), PF04781: Protein of
           unknown function (DUF627)
          Length = 1121

 Score = 30.7 bits (66), Expect = 0.90
 Identities = 24/92 (26%), Positives = 47/92 (51%), Gaps = 5/92 (5%)
 Frame = +1

Query: 364 LFKVTEDDIREVSMRILQLYKRAKVNP---EELETKVENLRKIYIANKHSQE*KIKKLRT 534
           L K++  D R   + +L+ Y+R +++     + +TK+   +  +++ +  ++ K      
Sbjct: 697 LVKLSVFDYRSYILHLLKRYQRDELDEIVDMDAKTKLAAAQAEHLSEEKQEKGKKSGSNK 756

Query: 535 KK-RNPKSPTASTSKDTRRDTKKEKSPK-TPP 624
           KK R+ K  +AS SKD   ++     PK TPP
Sbjct: 757 KKNRSNKRTSASMSKDDVHESSVNLEPKVTPP 788


>At5g48640.1 68418.m06015 cyclin family protein similar to SP|P55168
           Cyclin C {Gallus gallus}; contains Pfam profile PF00134:
           Cyclin, N-terminal domain
          Length = 253

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 16/63 (25%), Positives = 34/63 (53%)
 Frame = +2

Query: 68  DQNYIELKNQVIKAERRILKELGFCVHVKHPHKLIVVYLQLLQYEKNRQLMQMAWNYMND 247
           + N  ELK+ ++  E ++L+ L + + V HP++ +  +LQ      +  + Q+ W  +ND
Sbjct: 118 EYNKYELKD-ILGMEMKVLEALDYYLVVFHPYRSLSEFLQDAAL-NDVNMNQITWGIVND 175

Query: 248 ALR 256
             +
Sbjct: 176 TYK 178



 Score = 29.5 bits (63), Expect = 2.1
 Identities = 18/66 (27%), Positives = 30/66 (45%)
 Frame = +1

Query: 253 KTDVFMRFPPETIACACIYLTARKIGLPLPNNPHWFLLFKVTEDDIREVSMRILQLYKRA 432
           K D+ +  PP  IA ACIY+ +      +     WF       + ++ ++M IL  Y+  
Sbjct: 178 KMDLILVHPPYRIALACIYIASVHREKDI---TAWFEDLHEDMNLVKNIAMEILDFYENY 234

Query: 433 KVNPEE 450
           +   EE
Sbjct: 235 RTITEE 240


>At4g03153.1 68417.m00429 kinase interacting family protein similar
           to kinase interacting protein 1 (GI:13936326) [Petunia
           integrifolia]
          Length = 215

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 16/62 (25%), Positives = 31/62 (50%)
 Frame = +1

Query: 418 LYKRAKVNPEELETKVENLRKIYIANKHSQE*KIKKLRTKKRNPKSPTASTSKDTRRDTK 597
           L KRAK+N E     +E L ++Y +++   +     ++T   N  S  +S+  + R +  
Sbjct: 51  LMKRAKINYENKPKLIELLEELYRSHRSLAQKHDLLIKTSSLNSDSHNSSSCDEIRSEVC 110

Query: 598 KE 603
           +E
Sbjct: 111 EE 112


>At2g42300.1 68415.m05236 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 327

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +1

Query: 427 RAKVNPEELETKVENLRKIYIANKHSQE*KIKKLRTKK 540
           R K  P E ++ VEN  + Y + K  +  K  K  TKK
Sbjct: 133 RVKAEPAETDSMVENQNQSYSSGKRKEREKKVKSSTKK 170


>At5g15920.1 68418.m01862 structural maintenance of chromosomes
           (SMC) family protein (MSS2) similar to SMC-related
           protein MSS2 [Arabidopsis thaliana] GI:9965743; contains
           Pfam profiles PF02483: SMC family C-terminal domain,
           PF02463: RecF/RecN/SMC N terminal domain
          Length = 1053

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
 Frame = +1

Query: 364 LFKVTEDDIR-EVSMRILQLYKRAKVNPEELETKVENLRKIYIANKHSQE*KIKKLRTKK 540
           + K TED +  E  ++ L +Y+R     EEL ++V  L    I  K +Q+   +KL ++K
Sbjct: 344 ILKATEDLVAAERELQNLPVYERPVAKLEELSSQVTELHH-SINGKKNQKEDNEKLLSQK 402

Query: 541 RNPKSPTASTSKDTRRDTKK 600
           R          KD      K
Sbjct: 403 RYTLRQCVDKLKDMENANNK 422


>At5g01140.1 68418.m00018 hypothetical protein contains Pfam profile
           PF05056: Protein of unknown function (DUF674)
          Length = 473

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = -2

Query: 222 CISWRFFSYCSNCK*TTISLCGC 154
           C   RFFS C  C     SLC C
Sbjct: 99  CFGCRFFSICRMCSNFNTSLCKC 121


>At4g39590.1 68417.m05597 kelch repeat-containing F-box family
           protein contains F-box domain Pfam:PF00646 and Kelch
           motif Pfam:PF01344
          Length = 402

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 301 CIYLTARKIGLPLPNNPHWFLLFK 372
           C+YL  R    P  NN HWF L++
Sbjct: 90  CLYLCLR---FPFDNNTHWFTLYQ 110


>At3g28770.1 68416.m03591 expressed protein 
          Length = 2081

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 18/65 (27%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
 Frame = +1

Query: 424  KRAKVNPEELETKVENLRKIYIANKHSQE*KIKKLRTKKRNPKSPTASTSKDTRRDTKKE 603
            ++ +V+ +E ++  +  +K     K S+E   KKL+  + + K  T+      +++TKKE
Sbjct: 1174 QKNEVDKKEKKSSKDQQKKKEKEMKESEE---KKLKKNEEDRKKQTSVEENKKQKETKKE 1230

Query: 604  KS-PK 615
            K+ PK
Sbjct: 1231 KNKPK 1235


>At4g31210.1 68417.m04432 DNA topoisomerase family protein similar
           to DNA Topoisomerase I (SP:Q9X3X7) {Zymomonas mobilis}
          Length = 1280

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +1

Query: 493 NKHSQE*KIKKLRTKKRNPKSPTASTSKDTRRDTKKEKSPKTP 621
           N+ S   K+ K    +  PKSP  S SK  ++  K  K+ K P
Sbjct: 401 NRKSSSAKVAKNHPVEE-PKSPAPSNSKSEQQHLKSTKASKAP 442


>At4g20160.1 68417.m02949 expressed protein ; expression supported
           by MPSS
          Length = 1188

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = +1

Query: 436 VNPEELETKVEN-LRKIYIANKHSQE*KIKKLRTKKRNPKSPTASTSKDTRRDTKKEKS 609
           + P+ + T+ ++ LRK  I  K  QE       T K + K PT   S++ RR+ ++E+S
Sbjct: 582 IKPQGVTTQADSCLRKPAIEEKVLQE------TTVKSDLKKPTEKESREERREIEEEES 634


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,585,248
Number of Sequences: 28952
Number of extensions: 266051
Number of successful extensions: 896
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 891
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1393347168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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