BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0496 (670 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 27 2.4 SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces... 27 3.2 SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces po... 25 7.5 SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein L9|Schizosaccha... 25 9.9 SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein L9|Schizosacchar... 25 9.9 >SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|Schizosaccharomyces pombe|chr 1|||Manual Length = 1328 Score = 27.1 bits (57), Expect = 2.4 Identities = 11/39 (28%), Positives = 21/39 (53%) Frame = +3 Query: 387 GRGDGKWKEKDRETLRHDIELYKRMADKIEREIETFYDE 503 G GD + KE+ R+ LR I+ + D +++ ++ E Sbjct: 862 GDGDAETKERQRQMLRQVIQFCENKTDCRRKQVLAYFGE 900 >SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces pombe|chr 1|||Manual Length = 497 Score = 26.6 bits (56), Expect = 3.2 Identities = 10/30 (33%), Positives = 18/30 (60%) Frame = -2 Query: 528 SSSNFSSDIHRKMFRFHVQFYLPSFCIVQY 439 S SNF S+ + ++F F+ +PS C ++ Sbjct: 195 SVSNFPSNFNSELFPFYFHDVVPSICAFEF 224 >SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces pombe|chr 1|||Manual Length = 635 Score = 25.4 bits (53), Expect = 7.5 Identities = 11/18 (61%), Positives = 13/18 (72%), Gaps = 2/18 (11%) Frame = -2 Query: 216 DFYNHSVRR--GYTTQLD 169 DFY HS+R+ GYTT D Sbjct: 516 DFYEHSIRKTYGYTTHDD 533 >SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein L9|Schizosaccharomyces pombe|chr 1|||Manual Length = 190 Score = 25.0 bits (52), Expect = 9.9 Identities = 9/26 (34%), Positives = 18/26 (69%) Frame = +1 Query: 430 SDMILNYTKGWQIKLNVKSKHFTMNI 507 ++MI+ T+G++ K+ + HF +NI Sbjct: 76 NNMIIGVTQGFRYKMRLVYAHFPINI 101 >SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein L9|Schizosaccharomyces pombe|chr 3|||Manual Length = 189 Score = 25.0 bits (52), Expect = 9.9 Identities = 9/26 (34%), Positives = 18/26 (69%) Frame = +1 Query: 430 SDMILNYTKGWQIKLNVKSKHFTMNI 507 ++MI+ T+G++ K+ + HF +NI Sbjct: 76 NNMIIGVTQGFRYKMRLVYAHFPINI 101 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,513,778 Number of Sequences: 5004 Number of extensions: 49726 Number of successful extensions: 127 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 121 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 127 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 305854096 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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