Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0496
         (670 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|...    27   2.4  
SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces...    27   3.2  
SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces po...    25   7.5  
SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein L9|Schizosaccha...    25   9.9  
SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein L9|Schizosacchar...    25   9.9  

>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
           Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1328

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +3

Query: 387 GRGDGKWKEKDRETLRHDIELYKRMADKIEREIETFYDE 503
           G GD + KE+ R+ LR  I+  +   D   +++  ++ E
Sbjct: 862 GDGDAETKERQRQMLRQVIQFCENKTDCRRKQVLAYFGE 900


>SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 497

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -2

Query: 528 SSSNFSSDIHRKMFRFHVQFYLPSFCIVQY 439
           S SNF S+ + ++F F+    +PS C  ++
Sbjct: 195 SVSNFPSNFNSELFPFYFHDVVPSICAFEF 224


>SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 635

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 11/18 (61%), Positives = 13/18 (72%), Gaps = 2/18 (11%)
 Frame = -2

Query: 216 DFYNHSVRR--GYTTQLD 169
           DFY HS+R+  GYTT  D
Sbjct: 516 DFYEHSIRKTYGYTTHDD 533


>SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein
           L9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 190

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = +1

Query: 430 SDMILNYTKGWQIKLNVKSKHFTMNI 507
           ++MI+  T+G++ K+ +   HF +NI
Sbjct: 76  NNMIIGVTQGFRYKMRLVYAHFPINI 101


>SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein
           L9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 189

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = +1

Query: 430 SDMILNYTKGWQIKLNVKSKHFTMNI 507
           ++MI+  T+G++ K+ +   HF +NI
Sbjct: 76  NNMIIGVTQGFRYKMRLVYAHFPINI 101


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,513,778
Number of Sequences: 5004
Number of extensions: 49726
Number of successful extensions: 127
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)