BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0496 (670 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 12_01_0826 - 7629892-7629964,7630052-7630135,7630216-7630314,763... 29 3.3 05_04_0275 - 19650555-19650625,19650927-19651221,19651593-196518... 29 3.3 03_02_0709 + 10583621-10583626,10583711-10584712,10585304-10585669 29 3.3 03_05_0170 + 21482962-21483018,21483133-21483183,21483313-214835... 28 7.7 >12_01_0826 - 7629892-7629964,7630052-7630135,7630216-7630314, 7630391-7630449,7630804-7630888,7630961-7631058, 7631209-7631355,7631433-7631525,7631642-7631770, 7631859-7631912,7632133-7632309,7632396-7632481, 7634234-7634324,7634433-7634531,7634618-7634694, 7634784-7634952,7639551-7639642,7639712-7639825, 7640933-7641038,7641133-7641183,7641315-7641416, 7642581-7642655,7642768-7642965,7642998-7643123 Length = 827 Score = 29.1 bits (62), Expect = 3.3 Identities = 14/34 (41%), Positives = 20/34 (58%) Frame = +3 Query: 447 LYKRMADKIEREIETFYDEYPRRS*KMTILIQCV 548 LYK +AD + RE T +P + M+IL+Q V Sbjct: 339 LYKEIADTVRREATTIMAVFPSPNEVMSILVQRV 372 >05_04_0275 - 19650555-19650625,19650927-19651221,19651593-19651895, 19651978-19652182,19652266-19652501,19652619-19652816, 19653785-19653907,19654227-19654514,19654618-19654794, 19655580-19655915,19656753-19656863,19656977-19657227, 19657431-19657566 Length = 909 Score = 29.1 bits (62), Expect = 3.3 Identities = 11/40 (27%), Positives = 20/40 (50%) Frame = -3 Query: 476 FNFICHPFV*FNIMSEGLSVFFLPLSVTSTYT*NNDDYAA 357 FN PF + + G+++ +PL T+T N + + A Sbjct: 267 FNMFADPFAAYQVFHSGIAITLVPLDATNTIPVNEEFFYA 306 >03_02_0709 + 10583621-10583626,10583711-10584712,10585304-10585669 Length = 457 Score = 29.1 bits (62), Expect = 3.3 Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 2/34 (5%) Frame = +3 Query: 177 ELCSLGER--CDYRSQF*SRHGLKIRRPFIRHLR 272 ELC+ ER C Y ++ HGL+ RP IRH R Sbjct: 386 ELCNKWERGACPYGARCRFAHGLQELRPVIRHPR 419 >03_05_0170 + 21482962-21483018,21483133-21483183,21483313-21483500, 21483587-21483671,21483848-21483902,21483998-21484041, 21485045-21485113,21485207-21485307,21485396-21485452, 21485540-21485636 Length = 267 Score = 27.9 bits (59), Expect = 7.7 Identities = 11/26 (42%), Positives = 20/26 (76%), Gaps = 1/26 (3%) Frame = +1 Query: 61 RLFFEIKSVKVCCSIRVSMC-VICFR 135 +L F+I+S+++C S+ ++MC V C R Sbjct: 179 KLLFKIRSIRMCGSLALNMCGVACGR 204 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,959,485 Number of Sequences: 37544 Number of extensions: 280425 Number of successful extensions: 644 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 629 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 643 length of database: 14,793,348 effective HSP length: 79 effective length of database: 11,827,372 effective search space used: 1691314196 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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