Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0496
         (670 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0826 - 7629892-7629964,7630052-7630135,7630216-7630314,763...    29   3.3  
05_04_0275 - 19650555-19650625,19650927-19651221,19651593-196518...    29   3.3  
03_02_0709 + 10583621-10583626,10583711-10584712,10585304-10585669     29   3.3  
03_05_0170 + 21482962-21483018,21483133-21483183,21483313-214835...    28   7.7  

>12_01_0826 -
           7629892-7629964,7630052-7630135,7630216-7630314,
           7630391-7630449,7630804-7630888,7630961-7631058,
           7631209-7631355,7631433-7631525,7631642-7631770,
           7631859-7631912,7632133-7632309,7632396-7632481,
           7634234-7634324,7634433-7634531,7634618-7634694,
           7634784-7634952,7639551-7639642,7639712-7639825,
           7640933-7641038,7641133-7641183,7641315-7641416,
           7642581-7642655,7642768-7642965,7642998-7643123
          Length = 827

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +3

Query: 447 LYKRMADKIEREIETFYDEYPRRS*KMTILIQCV 548
           LYK +AD + RE  T    +P  +  M+IL+Q V
Sbjct: 339 LYKEIADTVRREATTIMAVFPSPNEVMSILVQRV 372


>05_04_0275 -
           19650555-19650625,19650927-19651221,19651593-19651895,
           19651978-19652182,19652266-19652501,19652619-19652816,
           19653785-19653907,19654227-19654514,19654618-19654794,
           19655580-19655915,19656753-19656863,19656977-19657227,
           19657431-19657566
          Length = 909

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = -3

Query: 476 FNFICHPFV*FNIMSEGLSVFFLPLSVTSTYT*NNDDYAA 357
           FN    PF  + +   G+++  +PL  T+T   N + + A
Sbjct: 267 FNMFADPFAAYQVFHSGIAITLVPLDATNTIPVNEEFFYA 306


>03_02_0709 + 10583621-10583626,10583711-10584712,10585304-10585669
          Length = 457

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = +3

Query: 177 ELCSLGER--CDYRSQF*SRHGLKIRRPFIRHLR 272
           ELC+  ER  C Y ++    HGL+  RP IRH R
Sbjct: 386 ELCNKWERGACPYGARCRFAHGLQELRPVIRHPR 419


>03_05_0170 +
           21482962-21483018,21483133-21483183,21483313-21483500,
           21483587-21483671,21483848-21483902,21483998-21484041,
           21485045-21485113,21485207-21485307,21485396-21485452,
           21485540-21485636
          Length = 267

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/26 (42%), Positives = 20/26 (76%), Gaps = 1/26 (3%)
 Frame = +1

Query: 61  RLFFEIKSVKVCCSIRVSMC-VICFR 135
           +L F+I+S+++C S+ ++MC V C R
Sbjct: 179 KLLFKIRSIRMCGSLALNMCGVACGR 204


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,959,485
Number of Sequences: 37544
Number of extensions: 280425
Number of successful extensions: 644
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)