Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0496
         (670 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27414| Best HMM Match : E_raikovi_mat (HMM E-Value=8.9)             32   0.37 
SB_51247| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.64 
SB_42271| Best HMM Match : DUF229 (HMM E-Value=0)                      29   3.4  

>SB_27414| Best HMM Match : E_raikovi_mat (HMM E-Value=8.9)
          Length = 79

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +2

Query: 2   QTCRRDSENSNNIRKFVNEFGYSLKLNRLKFVVRFAFLCA 121
           Q  + +S    ++ KF+  +  S KL R K V RFA LCA
Sbjct: 22  QNMKTNSNMCQDVEKFITCYVVSSKLCRAKIVQRFAHLCA 61


>SB_51247| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 174

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +2

Query: 2   QTCRRDSENSNNIRKFVNEFGYSLKLNRLKFVVRFAFLCA 121
           Q    +S    ++ KF+  +  S KL R K V RFA LCA
Sbjct: 117 QNMETNSNMCQDVEKFITCYVVSSKLCRAKIVQRFAHLCA 156


>SB_42271| Best HMM Match : DUF229 (HMM E-Value=0)
          Length = 591

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -1

Query: 415 FSFHFPSPRPIHKTTTITQHAVCSTLCT 332
           FS+  P P P  + T IT H  C TL T
Sbjct: 71  FSYKSPDPWPNTRNTDITLHQKCETLFT 98


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,473,095
Number of Sequences: 59808
Number of extensions: 357291
Number of successful extensions: 909
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 909
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)