Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0496
         (670 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81094-6|CAB03154.1|  666|Caenorhabditis elegans Hypothetical pr...    29   3.0  
U80029-18|AAB37597.2|  330|Caenorhabditis elegans Serpentine rec...    29   3.0  
AF098991-1|AAC67449.2|  758|Caenorhabditis elegans Hypothetical ...    28   5.2  
U80029-17|AAB37596.2|  330|Caenorhabditis elegans Serpentine rec...    27   9.1  
AF068713-9|AAC17800.1|  284|Caenorhabditis elegans Serpentine re...    27   9.1  
AF039042-4|AAC48247.2|  332|Caenorhabditis elegans Serpentine re...    27   9.1  

>Z81094-6|CAB03154.1|  666|Caenorhabditis elegans Hypothetical
           protein F58G11.3a protein.
          Length = 666

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +1

Query: 391 EVTESGRKKTERPSDMILNYTKGWQIKLNVKSKHFTMNIRGEV 519
           E+TE   ++   P D +L ++K W +      K F   I GEV
Sbjct: 277 EMTELYEREFGAPVDPLLLFSKSWMLMAKTTFKEFLQVIDGEV 319


>U80029-18|AAB37597.2|  330|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 20 protein.
          Length = 330

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = +2

Query: 86  LKFVVRFAFLCALFALDIRMLISFWFFES 172
           ++  + F FLC+L AL + ++ S+W ++S
Sbjct: 20  IQMTLIFQFLCSLIALPVVVVASYWLWKS 48


>AF098991-1|AAC67449.2|  758|Caenorhabditis elegans Hypothetical
           protein F59H5.1 protein.
          Length = 758

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +3

Query: 387 GRGDGKWKEKDRETLRHDIELYKRMADKIEREIETFYDEYP 509
           G+ + K +E  R T  HD  ++K + DKI    +   D++P
Sbjct: 209 GKKEEKAREVSRYTEYHDDMMWKFIVDKISEGAQPIIDKHP 249


>U80029-17|AAB37596.2|  330|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 22 protein.
          Length = 330

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +2

Query: 104 FAFLCALFALDIRMLISFWFFES 172
           F FLC+L AL + ++ S W ++S
Sbjct: 26  FQFLCSLIALPVVVIASHWLWKS 48


>AF068713-9|AAC17800.1|  284|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 68 protein.
          Length = 284

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/47 (25%), Positives = 23/47 (48%)
 Frame = +2

Query: 20  SENSNNIRKFVNEFGYSLKLNRLKFVVRFAFLCALFALDIRMLISFW 160
           SE S    +F  + GYS+ ++  K  +    +  +FA+   + I+ W
Sbjct: 40  SELSLFYTRFAADIGYSISISNFKLYILAVMISEIFAVKNFIFITLW 86


>AF039042-4|AAC48247.2|  332|Caenorhabditis elegans Serpentine
           receptor, class i protein27 protein.
          Length = 332

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/53 (24%), Positives = 26/53 (49%)
 Frame = -2

Query: 483 FHVQFYLPSFCIVQYHV*GSLCLFPSTFRHLDLYIKQRRLRSMQFVVHCVPLS 325
           F++ F +P   +  Y++ G++  F +TF    +     RL S +F +    +S
Sbjct: 7   FNIDFNVPFHLVYHYYISGTVAFFLNTFVIYLIIFHSSRLDSFKFYLLAFQIS 59


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,954,300
Number of Sequences: 27780
Number of extensions: 283438
Number of successful extensions: 903
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 901
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)