BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0496 (670 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z81094-6|CAB03154.1| 666|Caenorhabditis elegans Hypothetical pr... 29 3.0 U80029-18|AAB37597.2| 330|Caenorhabditis elegans Serpentine rec... 29 3.0 AF098991-1|AAC67449.2| 758|Caenorhabditis elegans Hypothetical ... 28 5.2 U80029-17|AAB37596.2| 330|Caenorhabditis elegans Serpentine rec... 27 9.1 AF068713-9|AAC17800.1| 284|Caenorhabditis elegans Serpentine re... 27 9.1 AF039042-4|AAC48247.2| 332|Caenorhabditis elegans Serpentine re... 27 9.1 >Z81094-6|CAB03154.1| 666|Caenorhabditis elegans Hypothetical protein F58G11.3a protein. Length = 666 Score = 29.1 bits (62), Expect = 3.0 Identities = 14/43 (32%), Positives = 21/43 (48%) Frame = +1 Query: 391 EVTESGRKKTERPSDMILNYTKGWQIKLNVKSKHFTMNIRGEV 519 E+TE ++ P D +L ++K W + K F I GEV Sbjct: 277 EMTELYEREFGAPVDPLLLFSKSWMLMAKTTFKEFLQVIDGEV 319 >U80029-18|AAB37597.2| 330|Caenorhabditis elegans Serpentine receptor, class ab (class a-like) protein 20 protein. Length = 330 Score = 29.1 bits (62), Expect = 3.0 Identities = 10/29 (34%), Positives = 20/29 (68%) Frame = +2 Query: 86 LKFVVRFAFLCALFALDIRMLISFWFFES 172 ++ + F FLC+L AL + ++ S+W ++S Sbjct: 20 IQMTLIFQFLCSLIALPVVVVASYWLWKS 48 >AF098991-1|AAC67449.2| 758|Caenorhabditis elegans Hypothetical protein F59H5.1 protein. Length = 758 Score = 28.3 bits (60), Expect = 5.2 Identities = 13/41 (31%), Positives = 22/41 (53%) Frame = +3 Query: 387 GRGDGKWKEKDRETLRHDIELYKRMADKIEREIETFYDEYP 509 G+ + K +E R T HD ++K + DKI + D++P Sbjct: 209 GKKEEKAREVSRYTEYHDDMMWKFIVDKISEGAQPIIDKHP 249 >U80029-17|AAB37596.2| 330|Caenorhabditis elegans Serpentine receptor, class ab (class a-like) protein 22 protein. Length = 330 Score = 27.5 bits (58), Expect = 9.1 Identities = 10/23 (43%), Positives = 16/23 (69%) Frame = +2 Query: 104 FAFLCALFALDIRMLISFWFFES 172 F FLC+L AL + ++ S W ++S Sbjct: 26 FQFLCSLIALPVVVIASHWLWKS 48 >AF068713-9|AAC17800.1| 284|Caenorhabditis elegans Serpentine receptor, class bc (class b-like) protein 68 protein. Length = 284 Score = 27.5 bits (58), Expect = 9.1 Identities = 12/47 (25%), Positives = 23/47 (48%) Frame = +2 Query: 20 SENSNNIRKFVNEFGYSLKLNRLKFVVRFAFLCALFALDIRMLISFW 160 SE S +F + GYS+ ++ K + + +FA+ + I+ W Sbjct: 40 SELSLFYTRFAADIGYSISISNFKLYILAVMISEIFAVKNFIFITLW 86 >AF039042-4|AAC48247.2| 332|Caenorhabditis elegans Serpentine receptor, class i protein27 protein. Length = 332 Score = 27.5 bits (58), Expect = 9.1 Identities = 13/53 (24%), Positives = 26/53 (49%) Frame = -2 Query: 483 FHVQFYLPSFCIVQYHV*GSLCLFPSTFRHLDLYIKQRRLRSMQFVVHCVPLS 325 F++ F +P + Y++ G++ F +TF + RL S +F + +S Sbjct: 7 FNIDFNVPFHLVYHYYISGTVAFFLNTFVIYLIIFHSSRLDSFKFYLLAFQIS 59 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,954,300 Number of Sequences: 27780 Number of extensions: 283438 Number of successful extensions: 903 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 858 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 901 length of database: 12,740,198 effective HSP length: 79 effective length of database: 10,545,578 effective search space used: 1508017654 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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