Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0496
         (670 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.1  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       23   2.0  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   2.0  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   4.6  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 363  VIVVVLCIGRGDGKWKEKD 419
            V V+V+C+ RG G   +KD
Sbjct: 1600 VAVIVICVLRGKGHGSDKD 1618


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -3

Query: 329 CLKISYYGCVNLRDSNTVASQVTNERT 249
           C+    YG  N+RD N  +++ T   T
Sbjct: 310 CMNPIVYGAFNIRDRNKTSARPTTIET 336


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -1

Query: 391 RPIHKTTTITQHAVCSTLCTIVSKYLIMGASICGIQTPLHRK 266
           +P+  ++T T   + ST  TIV  +L    S C +    H+K
Sbjct: 320 KPVLSSSTTTTSPMTSTKSTIVRNHL---NSTCSVTNSPHQK 358


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +3

Query: 420 RETLRHDIELYKRMADKIEREIETFYDE 503
           R T +HD  LY      +ERE+   + E
Sbjct: 597 RLTSKHDNSLYDEYIPFLERELRKAHQE 624


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,904
Number of Sequences: 438
Number of extensions: 3995
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)